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The map label for this gene is tnpB1 [H]

Identifier: 170756078

GI number: 170756078

Start: 2032472

End: 2034445

Strand: Reverse

Name: tnpB1 [H]

Synonym: CLD_2721

Alternate gene names: 170756078

Gene position: 2034445-2032472 (Counterclockwise)

Preceding gene: 170755021

Following gene: 170757174

Centisome position: 51.4

GC content: 25.63

Gene sequence:

>1974_bases
ATGAACAATAAATTACAGAATATACGAAATGGCCAACTAAATAAATATGATGAAATAATTAAATATTTAAAACAAGATAA
TGGATATTGGTTAAATAATGATAAGTGGGATATAACTAAAGATTTCTTCATGAAAGAGTTAGTACATAACAGCAAGTATA
TTAATTTTGAAAGATTTAATAATGTATTTCTAAAAAATGAATTGAAATATTATATAGTATTTAACTTTAAAGAAAGGAAG
TTAACTAATAAGTATATAGTTTCATTGGGAGAAACTTTTAAACATCTAAGTAATTTTTTAAATGAAAACTATTATAATAT
TAATAGTTTTAATGAAGTGACATATGAAAAATTTTATAGAAGATGGGTTTTGTTCTTATCGGAAATGGGTATTGCAATTA
AAAACAAGAAGATTAAGGGTTATAAAATTATAAATATATTATTTGTAATTAAATTTATAGAACAGTTTTATGATGATAGA
GAAGAGATAGAAAAAGATGTATGGTATGCAAAGAATATTAAAGGAGTAAAATTAGCAGCAACCCAAAGCAATAGAGCTAA
TAGACTAAATTTTACAACTATACCTAAATATTATAGAGAAACTGTAAAAAGATATTTTTTAACTATCATAACAAAAAAAT
CTTTTTCTCTTTGTACTAATATTCTAAGCCTTTTAAATTATTTTTTCAAATCCTTTTATTCTAGAGGATATAAAGATGGG
TTTATTGAAAATTTGAAACGAAAAGATATTGAAAAATATATCTATCACTTAACAAATGATAGAAAAGGCAAGAATAAAAA
TCAGACAACCCTTTATGTAACATATATAAGAGCATTTTTAGAATATATTCAGATAGCTGAGTATGATAAAGCCCCTAAAA
AGGATGTAGCATTTCTAATATTTCAAGATGATATTCCTAAAGGAGCATCACAAGAAAATAGAATTATAAAGGCTAAATTT
ATTCCTGAACCAATTTTAAAACAAATAGATAGTAACATTAAAGATTTAAGTAGGTCGGAGTATATTCCTGTTTATATTTT
ACTTAGGGAAACTGGATGGCGTGGAACTGATATATTAAACCTTAGATATAACAATTGTTTAGAACAGATTTGGAATAGCA
AGGAACAAAAATATAACTACTATCTTTGTGGTGAAATAACCAAAACAGGAATAAGTCAACTTAAAATTCCAATTAGAGAT
AAAGTTGCTGAAATGGTTAAGAAAATTATAGATAAAGCTAAAGAATTAAGTACAGAAGAAAATAATCCCCAAAAATATTT
ATTTAATACTTATAAGGGGAAAGTAAAAGGTACACCGTTGCCTAAATATAATTTAGTTTATTCTATTAAAAAACTAATTA
AAGAAAAAAATATTAGAGATTCTAATGGTAAATTATATCACTTTAGGCTTCATTCTTTAAGACATACAAGAGCTAAGGAA
TATGTAGAACAAGGTATAGGTATTAGTATTATACAACAAATATTAGGGCATACGAGCCTTCAAATGACCGTTCATTATGC
AACCGTCAGTGAAAATGCATTATATGAAAAGTGGAAAGCTACGGAAGATTTAGACTTATTTAGGGTTAATATAGAAACAC
GTAAACTTGAACAAGTGGATTTAAATTCAGATGGTGGTGAAAATATAATAAGATATGAATATGTTAAAAAGAATTTAGAT
GCAGTAAAAGTACCTTTTGGAGTATGTTTTAAAGCTTCTAAATTGCCTTGTAAACAACAAATGAATCATTGTTTAACCTG
TGCAAGTTTCTGCACTACAGTTGAGAATATACCTGAATATGAGGAAGAAATAGAGCAAGTTAAGAAACAAATTCAGATAA
GTGAAAGATGTGGTAGAGAATTATGGGCTGAAAAGAATAAACAATATTTAAATTTGCTAAGAGATACATTAGAAAAAATT
AAAGAACATAAATTGGTTCACAAGAATGCAAGTTCAAGAGAGGAAGTTTTATAA

Upstream 100 bases:

>100_bases
ATACCTATATCCATCCTTCTGATGAAGAAATAGCAAAAGAGTTTGAAAAGACTCGGCCAAATTTGGATTTAGATATTTAT
AGTAAAGGAGAAAACAATTA

Downstream 100 bases:

>100_bases
TGGCTGGAAGTACCAAAGGATTAAAAAAATATGCAAAAGAAAAAACTAAATTGACTTTAGAGAAGGTTGATAAAGCTATT
AGAGAACTCTCCTTTAATGG

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 657; Mature: 657

Protein sequence:

>657_residues
MNNKLQNIRNGQLNKYDEIIKYLKQDNGYWLNNDKWDITKDFFMKELVHNSKYINFERFNNVFLKNELKYYIVFNFKERK
LTNKYIVSLGETFKHLSNFLNENYYNINSFNEVTYEKFYRRWVLFLSEMGIAIKNKKIKGYKIINILFVIKFIEQFYDDR
EEIEKDVWYAKNIKGVKLAATQSNRANRLNFTTIPKYYRETVKRYFLTIITKKSFSLCTNILSLLNYFFKSFYSRGYKDG
FIENLKRKDIEKYIYHLTNDRKGKNKNQTTLYVTYIRAFLEYIQIAEYDKAPKKDVAFLIFQDDIPKGASQENRIIKAKF
IPEPILKQIDSNIKDLSRSEYIPVYILLRETGWRGTDILNLRYNNCLEQIWNSKEQKYNYYLCGEITKTGISQLKIPIRD
KVAEMVKKIIDKAKELSTEENNPQKYLFNTYKGKVKGTPLPKYNLVYSIKKLIKEKNIRDSNGKLYHFRLHSLRHTRAKE
YVEQGIGISIIQQILGHTSLQMTVHYATVSENALYEKWKATEDLDLFRVNIETRKLEQVDLNSDGGENIIRYEYVKKNLD
AVKVPFGVCFKASKLPCKQQMNHCLTCASFCTTVENIPEYEEEIEQVKKQIQISERCGRELWAEKNKQYLNLLRDTLEKI
KEHKLVHKNASSREEVL

Sequences:

>Translated_657_residues
MNNKLQNIRNGQLNKYDEIIKYLKQDNGYWLNNDKWDITKDFFMKELVHNSKYINFERFNNVFLKNELKYYIVFNFKERK
LTNKYIVSLGETFKHLSNFLNENYYNINSFNEVTYEKFYRRWVLFLSEMGIAIKNKKIKGYKIINILFVIKFIEQFYDDR
EEIEKDVWYAKNIKGVKLAATQSNRANRLNFTTIPKYYRETVKRYFLTIITKKSFSLCTNILSLLNYFFKSFYSRGYKDG
FIENLKRKDIEKYIYHLTNDRKGKNKNQTTLYVTYIRAFLEYIQIAEYDKAPKKDVAFLIFQDDIPKGASQENRIIKAKF
IPEPILKQIDSNIKDLSRSEYIPVYILLRETGWRGTDILNLRYNNCLEQIWNSKEQKYNYYLCGEITKTGISQLKIPIRD
KVAEMVKKIIDKAKELSTEENNPQKYLFNTYKGKVKGTPLPKYNLVYSIKKLIKEKNIRDSNGKLYHFRLHSLRHTRAKE
YVEQGIGISIIQQILGHTSLQMTVHYATVSENALYEKWKATEDLDLFRVNIETRKLEQVDLNSDGGENIIRYEYVKKNLD
AVKVPFGVCFKASKLPCKQQMNHCLTCASFCTTVENIPEYEEEIEQVKKQIQISERCGRELWAEKNKQYLNLLRDTLEKI
KEHKLVHKNASSREEVL
>Mature_657_residues
MNNKLQNIRNGQLNKYDEIIKYLKQDNGYWLNNDKWDITKDFFMKELVHNSKYINFERFNNVFLKNELKYYIVFNFKERK
LTNKYIVSLGETFKHLSNFLNENYYNINSFNEVTYEKFYRRWVLFLSEMGIAIKNKKIKGYKIINILFVIKFIEQFYDDR
EEIEKDVWYAKNIKGVKLAATQSNRANRLNFTTIPKYYRETVKRYFLTIITKKSFSLCTNILSLLNYFFKSFYSRGYKDG
FIENLKRKDIEKYIYHLTNDRKGKNKNQTTLYVTYIRAFLEYIQIAEYDKAPKKDVAFLIFQDDIPKGASQENRIIKAKF
IPEPILKQIDSNIKDLSRSEYIPVYILLRETGWRGTDILNLRYNNCLEQIWNSKEQKYNYYLCGEITKTGISQLKIPIRD
KVAEMVKKIIDKAKELSTEENNPQKYLFNTYKGKVKGTPLPKYNLVYSIKKLIKEKNIRDSNGKLYHFRLHSLRHTRAKE
YVEQGIGISIIQQILGHTSLQMTVHYATVSENALYEKWKATEDLDLFRVNIETRKLEQVDLNSDGGENIIRYEYVKKNLD
AVKVPFGVCFKASKLPCKQQMNHCLTCASFCTTVENIPEYEEEIEQVKKQIQISERCGRELWAEKNKQYLNLLRDTLEKI
KEHKLVHKNASSREEVL

Specific function: One of three proteins encoded by transposon Tn554 required for its transposition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 78340; Mature: 78340

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKLQNIRNGQLNKYDEIIKYLKQDNGYWLNNDKWDITKDFFMKELVHNSKYINFERFN
CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCEEEHHHHC
NVFLKNELKYYIVFNFKERKLTNKYIVSLGETFKHLSNFLNENYYNINSFNEVTYEKFYR
CEEEECCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
RWVLFLSEMGIAIKNKKIKGYKIINILFVIKFIEQFYDDREEIEKDVWYAKNIKGVKLAA
HHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEE
TQSNRANRLNFTTIPKYYRETVKRYFLTIITKKSFSLCTNILSLLNYFFKSFYSRGYKDG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
FIENLKRKDIEKYIYHLTNDRKGKNKNQTTLYVTYIRAFLEYIQIAEYDKAPKKDVAFLI
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
FQDDIPKGASQENRIIKAKFIPEPILKQIDSNIKDLSRSEYIPVYILLRETGWRGTDILN
EECCCCCCCCCCCCEEEEECCCHHHHHHHCCHHHHCCCCCCCEEEEEEECCCCCCCEEEE
LRYNNCLEQIWNSKEQKYNYYLCGEITKTGISQLKIPIRDKVAEMVKKIIDKAKELSTEE
EHHHHHHHHHHCCHHHCCCEEEECCHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
NNPQKYLFNTYKGKVKGTPLPKYNLVYSIKKLIKEKNIRDSNGKLYHFRLHSLRHTRAKE
CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHH
YVEQGIGISIIQQILGHTSLQMTVHYATVSENALYEKWKATEDLDLFRVNIETRKLEQVD
HHHCCCCHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHCCCCCCEEEEEEECHHHHEEEE
LNSDGGENIIRYEYVKKNLDAVKVPFGVCFKASKLPCKQQMNHCLTCASFCTTVENIPEY
CCCCCCCCCEEHHHHHCCCCEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
EEEIEQVKKQIQISERCGRELWAEKNKQYLNLLRDTLEKIKEHKLVHKNASSREEVL
HHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNNKLQNIRNGQLNKYDEIIKYLKQDNGYWLNNDKWDITKDFFMKELVHNSKYINFERFN
CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCEEEHHHHC
NVFLKNELKYYIVFNFKERKLTNKYIVSLGETFKHLSNFLNENYYNINSFNEVTYEKFYR
CEEEECCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
RWVLFLSEMGIAIKNKKIKGYKIINILFVIKFIEQFYDDREEIEKDVWYAKNIKGVKLAA
HHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEE
TQSNRANRLNFTTIPKYYRETVKRYFLTIITKKSFSLCTNILSLLNYFFKSFYSRGYKDG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
FIENLKRKDIEKYIYHLTNDRKGKNKNQTTLYVTYIRAFLEYIQIAEYDKAPKKDVAFLI
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
FQDDIPKGASQENRIIKAKFIPEPILKQIDSNIKDLSRSEYIPVYILLRETGWRGTDILN
EECCCCCCCCCCCCEEEEECCCHHHHHHHCCHHHHCCCCCCCEEEEEEECCCCCCCEEEE
LRYNNCLEQIWNSKEQKYNYYLCGEITKTGISQLKIPIRDKVAEMVKKIIDKAKELSTEE
EHHHHHHHHHHCCHHHCCCEEEECCHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
NNPQKYLFNTYKGKVKGTPLPKYNLVYSIKKLIKEKNIRDSNGKLYHFRLHSLRHTRAKE
CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHH
YVEQGIGISIIQQILGHTSLQMTVHYATVSENALYEKWKATEDLDLFRVNIETRKLEQVD
HHHCCCCHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHCCCCCCEEEEEEECHHHHEEEE
LNSDGGENIIRYEYVKKNLDAVKVPFGVCFKASKLPCKQQMNHCLTCASFCTTVENIPEY
CCCCCCCCCEEHHHHHCCCCEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
EEEIEQVKKQIQISERCGRELWAEKNKQYLNLLRDTLEKIKEHKLVHKNASSREEVL
HHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]