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The map label for this gene is yomE [H]

Identifier: 170754912

GI number: 170754912

Start: 1365108

End: 1366127

Strand: Direct

Name: yomE [H]

Synonym: CLD_3336

Alternate gene names: 170754912

Gene position: 1365108-1366127 (Clockwise)

Preceding gene: 170757115

Following gene: 170757203

Centisome position: 34.49

GC content: 30.49

Gene sequence:

>1020_bases
ATGTCTAAAAAGAGACAAAAGGAAATAAAAAGAAGGAAAAATAGAAAAAAGAAAAAAAAATCATTTATAGGAAGACTATT
TTTGTTTTTAGTTTATGAAGTTATAATAGGTGGAATTTTTTCTTTATTGATTGCCTTTTATGGACCTTTTGATAATGTAA
AAAGTACATTAGTGGGAACAGCTATGGCTACATATAAACATCAGTATATTGCAACTACTTTTTTATCTAAGGATGAAATA
AATAAAATTTTAAATAAGGATAAAGGAATAAGTAATTCAAGTTTAAAGGAAAATTATGGAGATATAAAAATAAAGAACAA
ATATGGTAATTCAGTAGAAAGATATGATATAAATACAGCTAAATTTGATGGTTATATATTAGAAATTAAAAATCCCCAAA
AAGTAAAAATAGGATATACAAAGTATATGGGAAAAATGGGTGAAAGAACTAGTAAAATGGCTGAGAGACATGGAGCCGTA
GCTGCTGTAAATGGTGGTGGATTTAGGGATGTATCATCCACAGGCAAACTTTGGACAGGCACCGGAGCCTATCCAGAAGG
ACTTGTAATATCTAATGGTAAAGTTATTTACAATGATTTTAAGTCTGGACAAAAGGTCAACGTTACAGCATTTACAAAGG
AAGGATTATTAGTTGTAGGAGATCATACGGTAGATGAACTTTTAAAAATGGGAGTAGTAGAAGCTTTGTCTTTTAGAAAT
ACATTAATAATTAATGGAAAGCCTATACCTTATAATGAAGGTATAAATCCTAGAACTGCTATAGGACAAAAACAAGATGG
AACTATAGTCTTATTAGTTATAGATGGAAGAAGAGGGATAAAACAAGGAGCTACTCTAGAAGAGGTAGAAAATATACTGC
TGCAAAGAGGAGTAGTGAATGCCAGTAATTTAGATGGAGGATCCTCTTCAACTATGTATTATAAAGGAAAAGTTATAAAT
AGACCTTGTAATTGGGATGGAGAAAGAACAGTAGCCACCTCCATATATGTAGAACCTTAA

Upstream 100 bases:

>100_bases
GTTTTTATATTTGTAACTCATTTGTTACAAATATAATGTATAATTACAATATAATTTATATGTTAATCATAAATAATTTT
TAAGTAAAAAAGGAGTATCT

Downstream 100 bases:

>100_bases
AGGAGAAGACTTACTTATGAAAAAAATTAAAATTATATTTGTATGGACACTAATTGCTATTGGTTTATCCTTTGCAGCTC
TGCTTTTCGTGGATAAAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MSKKRQKEIKRRKNRKKKKKSFIGRLFLFLVYEVIIGGIFSLLIAFYGPFDNVKSTLVGTAMATYKHQYIATTFLSKDEI
NKILNKDKGISNSSLKENYGDIKIKNKYGNSVERYDINTAKFDGYILEIKNPQKVKIGYTKYMGKMGERTSKMAERHGAV
AAVNGGGFRDVSSTGKLWTGTGAYPEGLVISNGKVIYNDFKSGQKVNVTAFTKEGLLVVGDHTVDELLKMGVVEALSFRN
TLIINGKPIPYNEGINPRTAIGQKQDGTIVLLVIDGRRGIKQGATLEEVENILLQRGVVNASNLDGGSSSTMYYKGKVIN
RPCNWDGERTVATSIYVEP

Sequences:

>Translated_339_residues
MSKKRQKEIKRRKNRKKKKKSFIGRLFLFLVYEVIIGGIFSLLIAFYGPFDNVKSTLVGTAMATYKHQYIATTFLSKDEI
NKILNKDKGISNSSLKENYGDIKIKNKYGNSVERYDINTAKFDGYILEIKNPQKVKIGYTKYMGKMGERTSKMAERHGAV
AAVNGGGFRDVSSTGKLWTGTGAYPEGLVISNGKVIYNDFKSGQKVNVTAFTKEGLLVVGDHTVDELLKMGVVEALSFRN
TLIINGKPIPYNEGINPRTAIGQKQDGTIVLLVIDGRRGIKQGATLEEVENILLQRGVVNASNLDGGSSSTMYYKGKVIN
RPCNWDGERTVATSIYVEP
>Mature_338_residues
SKKRQKEIKRRKNRKKKKKSFIGRLFLFLVYEVIIGGIFSLLIAFYGPFDNVKSTLVGTAMATYKHQYIATTFLSKDEIN
KILNKDKGISNSSLKENYGDIKIKNKYGNSVERYDINTAKFDGYILEIKNPQKVKIGYTKYMGKMGERTSKMAERHGAVA
AVNGGGFRDVSSTGKLWTGTGAYPEGLVISNGKVIYNDFKSGQKVNVTAFTKEGLLVVGDHTVDELLKMGVVEALSFRNT
LIINGKPIPYNEGINPRTAIGQKQDGTIVLLVIDGRRGIKQGATLEEVENILLQRGVVNASNLDGGSSSTMYYKGKVINR
PCNWDGERTVATSIYVEP

Specific function: Unknown

COG id: COG4632

COG function: function code G; Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018711
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF09992 DUF2233 [H]

EC number: NA

Molecular weight: Translated: 37620; Mature: 37489

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKRQKEIKRRKNRKKKKKSFIGRLFLFLVYEVIIGGIFSLLIAFYGPFDNVKSTLVGT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AMATYKHQYIATTFLSKDEINKILNKDKGISNSSLKENYGDIKIKNKYGNSVERYDINTA
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHCCCCEEEECCCCCCEEEEECCEE
KFDGYILEIKNPQKVKIGYTKYMGKMGERTSKMAERHGAVAAVNGGGFRDVSSTGKLWTG
EECCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEC
TGAYPEGLVISNGKVIYNDFKSGQKVNVTAFTKEGLLVVGDHTVDELLKMGVVEALSFRN
CCCCCCCEEEECCEEEEEECCCCCEEEEEEEECCCEEEECCCCHHHHHHHHHHHHHHCCC
TLIINGKPIPYNEGINPRTAIGQKQDGTIVLLVIDGRRGIKQGATLEEVENILLQRGVVN
EEEECCCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
ASNLDGGSSSTMYYKGKVINRPCNWDGERTVATSIYVEP
CCCCCCCCCCEEEEECEEECCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
SKKRQKEIKRRKNRKKKKKSFIGRLFLFLVYEVIIGGIFSLLIAFYGPFDNVKSTLVGT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AMATYKHQYIATTFLSKDEINKILNKDKGISNSSLKENYGDIKIKNKYGNSVERYDINTA
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHCCCCEEEECCCCCCEEEEECCEE
KFDGYILEIKNPQKVKIGYTKYMGKMGERTSKMAERHGAVAAVNGGGFRDVSSTGKLWTG
EECCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEC
TGAYPEGLVISNGKVIYNDFKSGQKVNVTAFTKEGLLVVGDHTVDELLKMGVVEALSFRN
CCCCCCCEEEECCEEEEEECCCCCEEEEEEEECCCEEEECCCCHHHHHHHHHHHHHHCCC
TLIINGKPIPYNEGINPRTAIGQKQDGTIVLLVIDGRRGIKQGATLEEVENILLQRGVVN
EEEECCCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
ASNLDGGSSSTMYYKGKVINRPCNWDGERTVATSIYVEP
CCCCCCCCCCEEEEECEEECCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]