| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754787
Identifier: 170754787
GI number: 170754787
Start: 436101
End: 437591
Strand: Direct
Name: 170754787
Synonym: CLD_0397
Alternate gene names: NA
Gene position: 436101-437591 (Clockwise)
Preceding gene: 170754453
Following gene: 170757483
Centisome position: 11.02
GC content: 24.88
Gene sequence:
>1491_bases ATGAGAAAAAGTAAAATTCTATTAATATTTATGATTTTTATTTATTCATTAACTATAACTGCCTGTGTGAATTTAGATAA TAAAAATAATATAGTAGCTCCCAATAACAATTCTTGTCCCATTGAAGGAACGTGGCAATTTGATTTTAGTAATTTAGATA AAGATAGTAAATTAAGATTAAGGCTAAAGAATAAAGATGTGATTATAAATTCCAAGTATATAATATTAGGAAATGAAGTA TGCAAATCACCTGATTTTAAGGTTAAAACTGTAAAAACAGAGGAGTATTTTTTATATAAATTAAGATTAAATCCCAATAA ATTAAATTTAGATAAAAAAGAAATAGAAGTTATTTCAACTTCTTCGGATAATAATCCTTTCTATGATTTTATAAAAATAG ATGAAAAAAAATTGTTAGTATATGTAGATAATCAATTGCTGGTTTTAACAAAAAAATCCAATAGCTCATCTATTGAACCT AAGCACAATACAATAGAAAAAAACTCACAACAGGATATAGTAATGCCAAAGAGATATACATTGCTAAGAACTGGCGTATT GATAGGATTAAAAAGTTCAAAAGAAGATTACGTAGATGAGTATAAGAATGAAAAAAAATATAGAACTATTTTTATTTCTT CCCGAAATAAAAATCTAAAGAATGTAATAGAGACTGAAAACCTATTTGTGCCTAGAAAAGATGGATTTTGTGAAATTGGA GTAAATAGAATAAATAATTCAAGTAATATACAAGATGCTATATTTGTAAACCCATTATACAATAATTACCCAATAAAAAA TAATTTTAGACTAGAACAGGATATTAAAAATAAAAGCATATATAGAGATATATTATTTGTAAGTAATGATTACATATCTA TAGAATATAACGATATTAATAAAGATAAGCCTATAGATTTATATAAAGTTAAAATGCTACCTATTGACAACATAAATGCA ATGGCAGGGGTAAATATAGGTGATATAATAGACAAGGATAGTGAAAAAATATTAGCATCATCCTTAGAAAGTTGCATTAG ATCTAAGGATAAAGATATTTTAAATAAATTAGAAAGAAGTTGTAGAAAAGATAGTTTTTTTCTTAATAGAAGAAATGGAC ACTGGATACTTAAGGGTAGATTAAATGGAATAGATGATAAGGAAGAATACATAGATTTTAATATAAATACTGAAATACCT GAAAAAATATTGAATTATGATGATTTAAATTTGTCTTGGAATAGTATTAAAAGTAAAGTTCCTAACGCCTTAGATGCATA TACTTCTCCTAATAAAGATTTAGCTATAATAACTACAGAGAAGGAGTTATATGTATATACCATAGAGGATGGAAAACTAT CCAACAAAGCTATTTATGAGATGGAGTTAAATAAAGAAACTGTAGTTATGGCAGAATGGGCTACAGCAGATTACGCTAAA AAATGGACAGATAGTATTTTAAAAAACAAAAATGCACATATAATAAAATAA
Upstream 100 bases:
>100_bases CTACTATATCAATAAAATTACCAATGATAAAACTATGATATAAATTTATTTTATATTTAAATATAATTAATATTAATTTA ATGTAACTAGGAGAATTCAT
Downstream 100 bases:
>100_bases TAAAGATATAAATGTTTTAATTATAAAAAGGAAATGGTGAAGAATGTCAAAAGAAAAGTTTAATAACGCAGTTAACATAG CAAAATATATATGTGAAAAT
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 496; Mature: 496
Protein sequence:
>496_residues MRKSKILLIFMIFIYSLTITACVNLDNKNNIVAPNNNSCPIEGTWQFDFSNLDKDSKLRLRLKNKDVIINSKYIILGNEV CKSPDFKVKTVKTEEYFLYKLRLNPNKLNLDKKEIEVISTSSDNNPFYDFIKIDEKKLLVYVDNQLLVLTKKSNSSSIEP KHNTIEKNSQQDIVMPKRYTLLRTGVLIGLKSSKEDYVDEYKNEKKYRTIFISSRNKNLKNVIETENLFVPRKDGFCEIG VNRINNSSNIQDAIFVNPLYNNYPIKNNFRLEQDIKNKSIYRDILFVSNDYISIEYNDINKDKPIDLYKVKMLPIDNINA MAGVNIGDIIDKDSEKILASSLESCIRSKDKDILNKLERSCRKDSFFLNRRNGHWILKGRLNGIDDKEEYIDFNINTEIP EKILNYDDLNLSWNSIKSKVPNALDAYTSPNKDLAIITTEKELYVYTIEDGKLSNKAIYEMELNKETVVMAEWATADYAK KWTDSILKNKNAHIIK
Sequences:
>Translated_496_residues MRKSKILLIFMIFIYSLTITACVNLDNKNNIVAPNNNSCPIEGTWQFDFSNLDKDSKLRLRLKNKDVIINSKYIILGNEV CKSPDFKVKTVKTEEYFLYKLRLNPNKLNLDKKEIEVISTSSDNNPFYDFIKIDEKKLLVYVDNQLLVLTKKSNSSSIEP KHNTIEKNSQQDIVMPKRYTLLRTGVLIGLKSSKEDYVDEYKNEKKYRTIFISSRNKNLKNVIETENLFVPRKDGFCEIG VNRINNSSNIQDAIFVNPLYNNYPIKNNFRLEQDIKNKSIYRDILFVSNDYISIEYNDINKDKPIDLYKVKMLPIDNINA MAGVNIGDIIDKDSEKILASSLESCIRSKDKDILNKLERSCRKDSFFLNRRNGHWILKGRLNGIDDKEEYIDFNINTEIP EKILNYDDLNLSWNSIKSKVPNALDAYTSPNKDLAIITTEKELYVYTIEDGKLSNKAIYEMELNKETVVMAEWATADYAK KWTDSILKNKNAHIIK >Mature_496_residues MRKSKILLIFMIFIYSLTITACVNLDNKNNIVAPNNNSCPIEGTWQFDFSNLDKDSKLRLRLKNKDVIINSKYIILGNEV CKSPDFKVKTVKTEEYFLYKLRLNPNKLNLDKKEIEVISTSSDNNPFYDFIKIDEKKLLVYVDNQLLVLTKKSNSSSIEP KHNTIEKNSQQDIVMPKRYTLLRTGVLIGLKSSKEDYVDEYKNEKKYRTIFISSRNKNLKNVIETENLFVPRKDGFCEIG VNRINNSSNIQDAIFVNPLYNNYPIKNNFRLEQDIKNKSIYRDILFVSNDYISIEYNDINKDKPIDLYKVKMLPIDNINA MAGVNIGDIIDKDSEKILASSLESCIRSKDKDILNKLERSCRKDSFFLNRRNGHWILKGRLNGIDDKEEYIDFNINTEIP EKILNYDDLNLSWNSIKSKVPNALDAYTSPNKDLAIITTEKELYVYTIEDGKLSNKAIYEMELNKETVVMAEWATADYAK KWTDSILKNKNAHIIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57678; Mature: 57678
Theoretical pI: Translated: 9.01; Mature: 9.01
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKSKILLIFMIFIYSLTITACVNLDNKNNIVAPNNNSCPIEGTWQFDFSNLDKDSKLRL CCCCCCHHHHHHHHHHHEEEEEEECCCCCCEECCCCCCCCEEEEEEECCCCCCCCCEEEE RLKNKDVIINSKYIILGNEVCKSPDFKVKTVKTEEYFLYKLRLNPNKLNLDKKEIEVIST EECCCEEEEECEEEEECHHHHCCCCCEEEEEEECEEEEEEEEECCCCCCCCHHHEEEEEE SSDNNPFYDFIKIDEKKLLVYVDNQLLVLTKKSNSSSIEPKHNTIEKNSQQDIVMPKRYT CCCCCCEEEEEEECCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCHHE LLRTGVLIGLKSSKEDYVDEYKNEKKYRTIFISSRNKNLKNVIETENLFVPRKDGFCEIG EEEEEEEEEECCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCEEEECCCCEEEEC VNRINNSSNIQDAIFVNPLYNNYPIKNNFRLEQDIKNKSIYRDILFVSNDYISIEYNDIN CEECCCCCCCCEEEEEEECCCCCCCCCCCEEHHHHCCHHHEEEEEEEECCEEEEEECCCC KDKPIDLYKVKMLPIDNINAMAGVNIGDIIDKDSEKILASSLESCIRSKDKDILNKLERS CCCCCEEEEEEEEEECCCCCEECCCHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH CRKDSFFLNRRNGHWILKGRLNGIDDKEEYIDFNINTEIPEKILNYDDLNLSWNSIKSKV HCCCCEEEECCCCCEEEEECCCCCCCCHHEEEEECCCCCHHHHCCCCCCCCCHHHHHHHC PNALDAYTSPNKDLAIITTEKELYVYTIEDGKLSNKAIYEMELNKETVVMAEWATADYAK CCHHHHCCCCCCCEEEEEECCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCHHHHH KWTDSILKNKNAHIIK HHHHHHHCCCCCEEEC >Mature Secondary Structure MRKSKILLIFMIFIYSLTITACVNLDNKNNIVAPNNNSCPIEGTWQFDFSNLDKDSKLRL CCCCCCHHHHHHHHHHHEEEEEEECCCCCCEECCCCCCCCEEEEEEECCCCCCCCCEEEE RLKNKDVIINSKYIILGNEVCKSPDFKVKTVKTEEYFLYKLRLNPNKLNLDKKEIEVIST EECCCEEEEECEEEEECHHHHCCCCCEEEEEEECEEEEEEEEECCCCCCCCHHHEEEEEE SSDNNPFYDFIKIDEKKLLVYVDNQLLVLTKKSNSSSIEPKHNTIEKNSQQDIVMPKRYT CCCCCCEEEEEEECCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCHHE LLRTGVLIGLKSSKEDYVDEYKNEKKYRTIFISSRNKNLKNVIETENLFVPRKDGFCEIG EEEEEEEEEECCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCEEEECCCCEEEEC VNRINNSSNIQDAIFVNPLYNNYPIKNNFRLEQDIKNKSIYRDILFVSNDYISIEYNDIN CEECCCCCCCCEEEEEEECCCCCCCCCCCEEHHHHCCHHHEEEEEEEECCEEEEEECCCC KDKPIDLYKVKMLPIDNINAMAGVNIGDIIDKDSEKILASSLESCIRSKDKDILNKLERS CCCCCEEEEEEEEEECCCCCEECCCHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH CRKDSFFLNRRNGHWILKGRLNGIDDKEEYIDFNINTEIPEKILNYDDLNLSWNSIKSKV HCCCCEEEECCCCCEEEEECCCCCCCCHHEEEEECCCCCHHHHCCCCCCCCCHHHHHHHC PNALDAYTSPNKDLAIITTEKELYVYTIEDGKLSNKAIYEMELNKETVVMAEWATADYAK CCHHHHCCCCCCCEEEEEECCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCHHHHH KWTDSILKNKNAHIIK HHHHHHHCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA