Click here to switch to the map view.

The map label for this gene is ytqB [H]

Identifier: 170757483

GI number: 170757483

Start: 437635

End: 438201

Strand: Direct

Name: ytqB [H]

Synonym: CLD_0396

Alternate gene names: 170757483

Gene position: 437635-438201 (Clockwise)

Preceding gene: 170754787

Following gene: 170756825

Centisome position: 11.06

GC content: 26.1

Gene sequence:

>567_bases
ATGTCAAAAGAAAAGTTTAATAACGCAGTTAACATAGCAAAATATATATGTGAAAATACACTGAAATTTGGTGATATAGT
TGTAGATTGTACTTTAGGTAAAGGACATGATACCATATTATTGGCAAATTTAGTGGGGAATAAAGGAAAAGTAATCTCCT
TTGATATTCAAAAGGAAGCTATAAATAAAACAAAAGAAAAATTAAGAGAGTTTGATTATAAAAATATAACCCTTATAAAT
GATGGGCATGAAAATTTAGACAGGCATATACAAGAGAAGGTAAAATTGTTTATTTTTAATTTAGGATATTTGCCAGGAAA
AGATCATAATATAACGACTAAAGCAGAAACTACTATAAAAGCACTAAAAAAAGCTTTAAAACTATTAGATGATAATGGTA
TAGTTTTATTGGTAATATATTATGGTCATGAAAGTGGAAAAGAAGAAAAAGCTGCTTTAGAGAAATTCACAAGTAAGCTA
GATCAAAAGGTTTATAATGTTATGAAAAATTCATTTATAAATCAAGTTAATAATCCACCGCTCTTAATTTGTATAGAAAA
AAGGTAA

Upstream 100 bases:

>100_bases
GCTAAAAAATGGACAGATAGTATTTTAAAAAACAAAAATGCACATATAATAAAATAATAAAGATATAAATGTTTTAATTA
TAAAAAGGAAATGGTGAAGA

Downstream 100 bases:

>100_bases
AATGTGTTGAGGAGAATGTTAACTTATGAAAAATAAAAAAGACTTATTTAAAATAATTGGCTTAAGTTTAATCATTATTA
TTGTAGCTGTGTTTTTAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSKEKFNNAVNIAKYICENTLKFGDIVVDCTLGKGHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLIN
DGHENLDRHIQEKVKLFIFNLGYLPGKDHNITTKAETTIKALKKALKLLDDNGIVLLVIYYGHESGKEEKAALEKFTSKL
DQKVYNVMKNSFINQVNNPPLLICIEKR

Sequences:

>Translated_188_residues
MSKEKFNNAVNIAKYICENTLKFGDIVVDCTLGKGHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLIN
DGHENLDRHIQEKVKLFIFNLGYLPGKDHNITTKAETTIKALKKALKLLDDNGIVLLVIYYGHESGKEEKAALEKFTSKL
DQKVYNVMKNSFINQVNNPPLLICIEKR
>Mature_187_residues
SKEKFNNAVNIAKYICENTLKFGDIVVDCTLGKGHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLIND
GHENLDRHIQEKVKLFIFNLGYLPGKDHNITTKAETTIKALKKALKLLDDNGIVLLVIYYGHESGKEEKAALEKFTSKLD
QKVYNVMKNSFINQVNNPPLLICIEKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010719 [H]

Pfam domain/function: PF06962 rRNA_methylase [H]

EC number: NA

Molecular weight: Translated: 21381; Mature: 21250

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEKFNNAVNIAKYICENTLKFGDIVVDCTLGKGHDTILLANLVGNKGKVISFDIQKEA
CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEECHHHH
INKTKEKLREFDYKNITLINDGHENLDRHIQEKVKLFIFNLGYLPGKDHNITTKAETTIK
HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHH
ALKKALKLLDDNGIVLLVIYYGHESGKEEKAALEKFTSKLDQKVYNVMKNSFINQVNNPP
HHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LLICIEKR
EEEEEECC
>Mature Secondary Structure 
SKEKFNNAVNIAKYICENTLKFGDIVVDCTLGKGHDTILLANLVGNKGKVISFDIQKEA
CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEECHHHH
INKTKEKLREFDYKNITLINDGHENLDRHIQEKVKLFIFNLGYLPGKDHNITTKAETTIK
HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHH
ALKKALKLLDDNGIVLLVIYYGHESGKEEKAALEKFTSKLDQKVYNVMKNSFINQVNNPP
HHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LLICIEKR
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]