Click here to switch to the map view.

The map label for this gene is pduB [H]

Identifier: 170754760

GI number: 170754760

Start: 1002672

End: 1003370

Strand: Direct

Name: pduB [H]

Synonym: CLD_3675

Alternate gene names: 170754760

Gene position: 1002672-1003370 (Clockwise)

Preceding gene: 170754602

Following gene: 170756409

Centisome position: 25.33

GC content: 38.63

Gene sequence:

>699_bases
ATGAATACACCATCATCAATAACAGAATTTGTAGGAACGGCAATTGGAGATACCATTGGCTTAGTCATAGCTAATGTTGA
TGGTTCCCTTCATGAAAAAATGGGACTAGATAAAAAATATCGATCTATAGGAATAATTAGTGCAAGAATAGGTGCAGGAC
CACATATTATGGCAGCAGATGAGGCTGTAAAAGCTACTAATACAGAAGTAGTAAAGATTGAAATGCCAAGAGATACAAAG
GGTGGAGCAGGACATGGTTGCTTAATCATTCTGGAAGCAGAAGATGTAACAGATGCAAGAAGAGCAGTAGAAGTTGTTCT
TAAAGAATTAGATAGAACTTTTGGGGATGTTTATGCATGTGATTCAGGGCATTTGGAGCTTTCATATACTGCAAGAGCAA
GCTTGGCATCAGAAAAAGCATTTGGTGCTCCACTTGGAAAAGCTTTTGGGATAATTGCTGGTGCTCCAGCTGGTATCGGT
TTAGTAATGGCAGATACAGCAATGAAAACTGCAAATATTGAGATGGTAACATATGCAAGCCCAGATGCAGGAACAGCACA
CACAAACGAAGTAATTATAACAGTTACTGGAGATTCAGATGCTGTTAGACAATCAGTAATAGCTGCAAGAGAAATTGGTT
TATCTTTATTGAAAGCAATGGGGGAAGAGGCTCGATCTGCTACTAAACCATATATTTAG

Upstream 100 bases:

>100_bases
TATATTTTGAACAAAATTATATAAGTAGTAGAAAAAATACTTAGTAAGGAAGTTGCTTAAGCAAGTGAAAATAATGTGGT
AGAAAAGAGAGGTACTAGCA

Downstream 100 bases:

>100_bases
CAGATGATTTATTAATCTGTTTTTTTCTTATTAAAAAATATTCAAGGTCATGTACTTGAAAGAGATATATTAGGATATAT
AGCAGGAGCAGATGTAAAAT

Product: putative propanediol utilization protein PduB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MNTPSSITEFVGTAIGDTIGLVIANVDGSLHEKMGLDKKYRSIGIISARIGAGPHIMAADEAVKATNTEVVKIEMPRDTK
GGAGHGCLIILEAEDVTDARRAVEVVLKELDRTFGDVYACDSGHLELSYTARASLASEKAFGAPLGKAFGIIAGAPAGIG
LVMADTAMKTANIEMVTYASPDAGTAHTNEVIITVTGDSDAVRQSVIAAREIGLSLLKAMGEEARSATKPYI

Sequences:

>Translated_232_residues
MNTPSSITEFVGTAIGDTIGLVIANVDGSLHEKMGLDKKYRSIGIISARIGAGPHIMAADEAVKATNTEVVKIEMPRDTK
GGAGHGCLIILEAEDVTDARRAVEVVLKELDRTFGDVYACDSGHLELSYTARASLASEKAFGAPLGKAFGIIAGAPAGIG
LVMADTAMKTANIEMVTYASPDAGTAHTNEVIITVTGDSDAVRQSVIAAREIGLSLLKAMGEEARSATKPYI
>Mature_232_residues
MNTPSSITEFVGTAIGDTIGLVIANVDGSLHEKMGLDKKYRSIGIISARIGAGPHIMAADEAVKATNTEVVKIEMPRDTK
GGAGHGCLIILEAEDVTDARRAVEVVLKELDRTFGDVYACDSGHLELSYTARASLASEKAFGAPLGKAFGIIAGAPAGIG
LVMADTAMKTANIEMVTYASPDAGTAHTNEVIITVTGDSDAVRQSVIAAREIGLSLLKAMGEEARSATKPYI

Specific function: May Be Involved In The Formation Of A Specific Microcompartiment In The Cell In Which The Metabolism Of Potentially Toxic By-Products Takes Place. [C]

COG id: COG4816

COG function: function code E; Ethanolamine utilization protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EutL/PduB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009193
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 24104; Mature: 24104

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPSSITEFVGTAIGDTIGLVIANVDGSLHEKMGLDKKYRSIGIISARIGAGPHIMAAD
CCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCHHHHHEEEEEEECCCCCCEEECC
EAVKATNTEVVKIEMPRDTKGGAGHGCLIILEAEDVTDARRAVEVVLKELDRTFGDVYAC
CHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEC
DSGHLELSYTARASLASEKAFGAPLGKAFGIIAGAPAGIGLVMADTAMKTANIEMVTYAS
CCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHEECCCCCCEEEEECCCEEECCEEEEEEEC
PDAGTAHTNEVIITVTGDSDAVRQSVIAAREIGLSLLKAMGEEARSATKPYI
CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNTPSSITEFVGTAIGDTIGLVIANVDGSLHEKMGLDKKYRSIGIISARIGAGPHIMAAD
CCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCHHHHHEEEEEEECCCCCCEEECC
EAVKATNTEVVKIEMPRDTKGGAGHGCLIILEAEDVTDARRAVEVVLKELDRTFGDVYAC
CHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEC
DSGHLELSYTARASLASEKAFGAPLGKAFGIIAGAPAGIGLVMADTAMKTANIEMVTYAS
CCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHEECCCCCCEEEEECCCEEECCEEEEEEEC
PDAGTAHTNEVIITVTGDSDAVRQSVIAAREIGLSLLKAMGEEARSATKPYI
CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609 [H]