| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754602
Identifier: 170754602
GI number: 170754602
Start: 998684
End: 999775
Strand: Direct
Name: 170754602
Synonym: CLD_3678
Alternate gene names: NA
Gene position: 998684-999775 (Clockwise)
Preceding gene: 170755368
Following gene: 170754760
Centisome position: 25.23
GC content: 30.31
Gene sequence:
>1092_bases ATGGGTAAAGAATTTAATTTATCTGAATATATGAGTGAAGGTATTGAAAATATAGTAAAGAACGTTTTAAAATCATCTAT AAAAAATCCAAAGGAAGCTGCATTTGTAATAAAGTATATGTTAGCAGTAAAGGATGCAAAAAATAAAAGGGATATGTTAG AAAGTAAAGGAGAGCATATCCCACCATTTTTAATGGTAAGTATTGCCACTGATTGTAATTTGCATTGTAAGGGCTGTTAT GCAAGAGCTAATAAATCATGTGGAGATAACTTAAAAGCTAGTGAGATGTCGGAAGAAAGATGGGGAGAAATCTTTAATGA AGCAAAGGAAGTTGGAATTTCATTTTCATTATTATTAGGAGGAGAACCGTTGATGAGAAGAGGGGTTATTGAAAAAGCTT CTTCTGTTAAAGAAATAGTTTTTCCAATTTTCACAAATGGAACTATGCTAGATGAAAGTTATATAAATTTATTTGATAAA AATAGAAATCTTGTGCCAATGATAAGTATTGAAGGTGATAAGGATCAAACAGATGAAAGAAGAGGAGAAGGAACTTATAA TTCAATAATGACTGCAATGAATAGCTTGAATAAAAAGGGTATTTTATTTGGAGGTTCTGTAACCGTAACAACTGAAAATA TAATAACTGTTACAAATAAAGAGTTTGTACAGGAGCTTTATAATAAAGGGACAAGAGTATTAATATTTGTGGAGTACGTT CCAGTAACTAACTCTACTAGAAATCTTTCACCTACGGATAAGGAACGTTTAATATTAGAAGAAAAGATAGAAGAATTGAG AAAAGTATTTGAAAACATGGTGTTTTTATCATTCCCTGGTGATGAAAAATATTCAGGTGGATGTTTAGCTGCTGGAAGAG GTTTTTTTCATATAAATGCTAATGGTGGAGCAGAGCCATGTCCATTTTCACCATATTCAGATATTAATTTAAAAGAATGT AGTTTAAGAGAAGCTTTAAAATCACCATTATTTAAAAAGCTTAAAGATAATGAAATGTTACTTGGAGAACATGATGGTGG ATGTTTATTATTTGAAAAAGAAGACCATGTTAAAGAGTTGTTAGGATTGTAA
Upstream 100 bases:
>100_bases CCTTAGTAATATTGATATTAATATTAAAGAAGAAAGAGATAGGCTTATTGATATTCAATTAGATTTATTTTTTTAATAAA GAGTTTTGGGGGGATAAATA
Downstream 100 bases:
>100_bases TAAAGTGAGAGTGAGTAAATGGTGTTAAAAATACCTATGTTTTCTGAGGGGTGATGAAAAAATATATATACTATGATATA ATTCTCCATGCAAATTAAAA
Product: radical SAM domain-containing protein
Products: NA
Alternate protein names: Radical SAM Domain-Containing Protein; Fe-S Oxidoreductase; Radical SAM Family Protein; Fe-S Oxidoreductases; Co PQQ Biosynthesis Protein E; AstB/ChuR-Related Protein; Fe-S Oxidoreductase Of MoeA/NarA Subfamily; MoeA/NarA Subfamily Fe-S Oxidoreductase; MoaA/NirJ Family Fe-S Oxidoreductase; Radical SAM Family Fe-S Protein
Number of amino acids: Translated: 363; Mature: 362
Protein sequence:
>363_residues MGKEFNLSEYMSEGIENIVKNVLKSSIKNPKEAAFVIKYMLAVKDAKNKRDMLESKGEHIPPFLMVSIATDCNLHCKGCY ARANKSCGDNLKASEMSEERWGEIFNEAKEVGISFSLLLGGEPLMRRGVIEKASSVKEIVFPIFTNGTMLDESYINLFDK NRNLVPMISIEGDKDQTDERRGEGTYNSIMTAMNSLNKKGILFGGSVTVTTENIITVTNKEFVQELYNKGTRVLIFVEYV PVTNSTRNLSPTDKERLILEEKIEELRKVFENMVFLSFPGDEKYSGGCLAAGRGFFHINANGGAEPCPFSPYSDINLKEC SLREALKSPLFKKLKDNEMLLGEHDGGCLLFEKEDHVKELLGL
Sequences:
>Translated_363_residues MGKEFNLSEYMSEGIENIVKNVLKSSIKNPKEAAFVIKYMLAVKDAKNKRDMLESKGEHIPPFLMVSIATDCNLHCKGCY ARANKSCGDNLKASEMSEERWGEIFNEAKEVGISFSLLLGGEPLMRRGVIEKASSVKEIVFPIFTNGTMLDESYINLFDK NRNLVPMISIEGDKDQTDERRGEGTYNSIMTAMNSLNKKGILFGGSVTVTTENIITVTNKEFVQELYNKGTRVLIFVEYV PVTNSTRNLSPTDKERLILEEKIEELRKVFENMVFLSFPGDEKYSGGCLAAGRGFFHINANGGAEPCPFSPYSDINLKEC SLREALKSPLFKKLKDNEMLLGEHDGGCLLFEKEDHVKELLGL >Mature_362_residues GKEFNLSEYMSEGIENIVKNVLKSSIKNPKEAAFVIKYMLAVKDAKNKRDMLESKGEHIPPFLMVSIATDCNLHCKGCYA RANKSCGDNLKASEMSEERWGEIFNEAKEVGISFSLLLGGEPLMRRGVIEKASSVKEIVFPIFTNGTMLDESYINLFDKN RNLVPMISIEGDKDQTDERRGEGTYNSIMTAMNSLNKKGILFGGSVTVTTENIITVTNKEFVQELYNKGTRVLIFVEYVP VTNSTRNLSPTDKERLILEEKIEELRKVFENMVFLSFPGDEKYSGGCLAAGRGFFHINANGGAEPCPFSPYSDINLKECS LREALKSPLFKKLKDNEMLLGEHDGGCLLFEKEDHVKELLGL
Specific function: Unknown
COG id: COG0535
COG function: function code R; Predicted Fe-S oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40680; Mature: 40549
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKEFNLSEYMSEGIENIVKNVLKSSIKNPKEAAFVIKYMLAVKDAKNKRDMLESKGEHI CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC PPFLMVSIATDCNLHCKGCYARANKSCGDNLKASEMSEERWGEIFNEAKEVGISFSLLLG CCEEEEEEECCCCEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEC GEPLMRRGVIEKASSVKEIVFPIFTNGTMLDESYINLFDKNRNLVPMISIEGDKDQTDER CCHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCEEEEEEECCCCCCCHHH RGEGTYNSIMTAMNSLNKKGILFGGSVTVTTENIITVTNKEFVQELYNKGTRVLIFVEYV CCCCHHHHHHHHHHHCCCCCEEECCEEEEEECCEEEECCHHHHHHHHCCCCEEEEEEEEE PVTNSTRNLSPTDKERLILEEKIEELRKVFENMVFLSFPGDEKYSGGCLAAGRGFFHINA ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEECCEEEEEEC NGGAEPCPFSPYSDINLKECSLREALKSPLFKKLKDNEMLLGEHDGGCLLFEKEDHVKEL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECHHHHHHH LGL HCC >Mature Secondary Structure GKEFNLSEYMSEGIENIVKNVLKSSIKNPKEAAFVIKYMLAVKDAKNKRDMLESKGEHI CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC PPFLMVSIATDCNLHCKGCYARANKSCGDNLKASEMSEERWGEIFNEAKEVGISFSLLLG CCEEEEEEECCCCEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEC GEPLMRRGVIEKASSVKEIVFPIFTNGTMLDESYINLFDKNRNLVPMISIEGDKDQTDER CCHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCEEEEEEECCCCCCCHHH RGEGTYNSIMTAMNSLNKKGILFGGSVTVTTENIITVTNKEFVQELYNKGTRVLIFVEYV CCCCHHHHHHHHHHHCCCCCEEECCEEEEEECCEEEECCHHHHHHHHCCCCEEEEEEEEE PVTNSTRNLSPTDKERLILEEKIEELRKVFENMVFLSFPGDEKYSGGCLAAGRGFFHINA ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEECCEEEEEEC NGGAEPCPFSPYSDINLKECSLREALKSPLFKKLKDNEMLLGEHDGGCLLFEKEDHVKEL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECHHHHHHH LGL HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA