| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754713
Identifier: 170754713
GI number: 170754713
Start: 2426846
End: 2428801
Strand: Reverse
Name: 170754713
Synonym: CLD_2344
Alternate gene names: NA
Gene position: 2428801-2426846 (Counterclockwise)
Preceding gene: 170755724
Following gene: 170757393
Centisome position: 61.36
GC content: 35.22
Gene sequence:
>1956_bases ATGAGCAATCAAAAATGTAAATTGGCAAAGGAAGCCTATGGCGGATGCAAAGGGGAAAATTATGAACCCTTTATACCTAT TACAGAAGCTATGCCAGAGACAACGGGGTATTCTATTATTTTAGGTATTGTAATGGCATGTTTATTTGCAGCTGCAAATA CTTATTTAGGCCTTAAAGTTGGTCTTACAATTGCAGCTGGTATACCTGGAGCTATACTTGCAACAGGTATATTAAAAGGA TTATTTAGAAGAAATAATATTTTAGAAGCAAATATGGTAGCTTCACTGGCAGCAATGGGTGAATCTATAGCAGGAGGAAT TATTTTTACTCTGCCAGCATTAATTTTGTGGAAGTTTGAATTAAGTATTACCACTATAATAATAGTTACAATAATTGGTG GGTTAATGGGAACATTCTTTATTACTCCACTTAGAAGATTTTTAATAGTGGAAGAACATGGTGAATTAGTTTATCCAGAA AGTATGGCAGCTGCTGAGGTTTTGGTTACAGGGAGTCAAGGAGGAGAAGGATTTAAAACTGTTGTATCAGGTCTTGGTGT AGGAGGAGCCTATAAATTTTTATCTGGAGGATTTAAACTTTGGAATGAGCAAGCTTCCTATGTGTTTAAATCTTACCAAG GAACTATGATAAGTGTAGATACATTAGCTTCCTTACTTGGTGTTGGATTTATAGTTGGTACAAAAGCATCTCTATTGATG TTTGGTGGTTCTGTTATTGCATGGTTTGGTCTAATACCATTGATTAAATATTTAGGAGCAGGCCTTGCAGCACCATTATT TCCATCTACGAAACTTATAGTTGATATGACAGCCCCAGAAATATGGTCTAGTTATATTAAATATATAGGTGCTGGAGCAG TTGCTATGGGAGGATTTATTTCTCTTGCTAAATCAATGCCTACTATAATAAAAAGCTTTAAACAAGCAATGGGAGGAATA GGCCATGGTGGAAAAGAAGATACAAGCAGAATAAATATTGAAGCACCAATAACTTGGGTATTAGGAGCAGCAGTATTTGG ATTTGCATTAACATGGCTTTTTCCAATGATAAGAGGTGGATTTATAGGAGGTTTACTTGCGGTATTATTTAGTTTTTTCT TTGCAGTAGTATCTGCTAGAATGGTTGGCATAATTGGGGCATCTAATAATCCCGTATCTGGCATGACTATAGCAACCCTA CTTTTTGTAACAACAATATTAAAACTAACAGGTGTTGTTGGGAATGAAGGTCTGAGAAAATCCATACTTATAGGTGGGGT AGTCTGTGTTGCTATAGCTGTAGCAGGAGGCGCTGCTCAAAGCTTAAAAACAACATTTATAATAGGTGGTACTCCTAAAA AAGTTCAAATTGGAATGTTTATAGCAATAGCATGTTCATCAGGATTTGCAGCCATTGTTGTTAAAATGTTACATAGTGCG TATGGAATAGGTAGTGCAGATGTTTCAGCACCACAGGCTAGTTTAATGAAAATGTTAGTTGAGGGTATAATGTCAGCTAA ACTTCCTTGGACATTAGTTTTGGTCGGAGCTGCTATAGCAATATTTTGTGAACTTGCAAGTATACCAATTCTTCCAGTAG CCCTTGGTATTTACTTACCTATATCCTTAAATAGTGCAATATTAACTGGAGGAATATTAAGAGTATTAGTTGAAAGAAAG TTCAAAAAAGATGAAGAAAGAAAGTCAGAATCTGTTGAGAAAGGTGTGCTTTTGGCATCAGGACTTGTGGCAGGGGATGC ACTTATAGGTATAGTTATAGCTGTATTCGCAACATTAAATGTAAATATAGCATTTGGTGAAAAAATTATGCCAAAAATTG CAAATAGTAATATAGTATCCTTTGTGATCTTCATTTTATTAGGAGTTTGGATATATAAATTCGCATGTAGCAAAAAAGAA GTTGCGTGTAACAAAAATGAAGGAGCTAATGTATAA
Upstream 100 bases:
>100_bases GTTGGAAAATTGATTTCTTAGTTAACTATAAGTTTATGTTAATCATAAGAAATCAATTTCCTTATACTCGAATTCTACAA TAGATAAGGTAGGTGTTAAT
Downstream 100 bases:
>100_bases GAATTATGGATTCAAAAGATGATAAATATAATTTTCTAAAGCAGATACCATATCGGACTAATTATAATTGGATAGAAGAA GAAGGTCAGGTTATATTAAC
Product: OPT family oligopeptide transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 651; Mature: 650
Protein sequence:
>651_residues MSNQKCKLAKEAYGGCKGENYEPFIPITEAMPETTGYSIILGIVMACLFAAANTYLGLKVGLTIAAGIPGAILATGILKG LFRRNNILEANMVASLAAMGESIAGGIIFTLPALILWKFELSITTIIIVTIIGGLMGTFFITPLRRFLIVEEHGELVYPE SMAAAEVLVTGSQGGEGFKTVVSGLGVGGAYKFLSGGFKLWNEQASYVFKSYQGTMISVDTLASLLGVGFIVGTKASLLM FGGSVIAWFGLIPLIKYLGAGLAAPLFPSTKLIVDMTAPEIWSSYIKYIGAGAVAMGGFISLAKSMPTIIKSFKQAMGGI GHGGKEDTSRINIEAPITWVLGAAVFGFALTWLFPMIRGGFIGGLLAVLFSFFFAVVSARMVGIIGASNNPVSGMTIATL LFVTTILKLTGVVGNEGLRKSILIGGVVCVAIAVAGGAAQSLKTTFIIGGTPKKVQIGMFIAIACSSGFAAIVVKMLHSA YGIGSADVSAPQASLMKMLVEGIMSAKLPWTLVLVGAAIAIFCELASIPILPVALGIYLPISLNSAILTGGILRVLVERK FKKDEERKSESVEKGVLLASGLVAGDALIGIVIAVFATLNVNIAFGEKIMPKIANSNIVSFVIFILLGVWIYKFACSKKE VACNKNEGANV
Sequences:
>Translated_651_residues MSNQKCKLAKEAYGGCKGENYEPFIPITEAMPETTGYSIILGIVMACLFAAANTYLGLKVGLTIAAGIPGAILATGILKG LFRRNNILEANMVASLAAMGESIAGGIIFTLPALILWKFELSITTIIIVTIIGGLMGTFFITPLRRFLIVEEHGELVYPE SMAAAEVLVTGSQGGEGFKTVVSGLGVGGAYKFLSGGFKLWNEQASYVFKSYQGTMISVDTLASLLGVGFIVGTKASLLM FGGSVIAWFGLIPLIKYLGAGLAAPLFPSTKLIVDMTAPEIWSSYIKYIGAGAVAMGGFISLAKSMPTIIKSFKQAMGGI GHGGKEDTSRINIEAPITWVLGAAVFGFALTWLFPMIRGGFIGGLLAVLFSFFFAVVSARMVGIIGASNNPVSGMTIATL LFVTTILKLTGVVGNEGLRKSILIGGVVCVAIAVAGGAAQSLKTTFIIGGTPKKVQIGMFIAIACSSGFAAIVVKMLHSA YGIGSADVSAPQASLMKMLVEGIMSAKLPWTLVLVGAAIAIFCELASIPILPVALGIYLPISLNSAILTGGILRVLVERK FKKDEERKSESVEKGVLLASGLVAGDALIGIVIAVFATLNVNIAFGEKIMPKIANSNIVSFVIFILLGVWIYKFACSKKE VACNKNEGANV >Mature_650_residues SNQKCKLAKEAYGGCKGENYEPFIPITEAMPETTGYSIILGIVMACLFAAANTYLGLKVGLTIAAGIPGAILATGILKGL FRRNNILEANMVASLAAMGESIAGGIIFTLPALILWKFELSITTIIIVTIIGGLMGTFFITPLRRFLIVEEHGELVYPES MAAAEVLVTGSQGGEGFKTVVSGLGVGGAYKFLSGGFKLWNEQASYVFKSYQGTMISVDTLASLLGVGFIVGTKASLLMF GGSVIAWFGLIPLIKYLGAGLAAPLFPSTKLIVDMTAPEIWSSYIKYIGAGAVAMGGFISLAKSMPTIIKSFKQAMGGIG HGGKEDTSRINIEAPITWVLGAAVFGFALTWLFPMIRGGFIGGLLAVLFSFFFAVVSARMVGIIGASNNPVSGMTIATLL FVTTILKLTGVVGNEGLRKSILIGGVVCVAIAVAGGAAQSLKTTFIIGGTPKKVQIGMFIAIACSSGFAAIVVKMLHSAY GIGSADVSAPQASLMKMLVEGIMSAKLPWTLVLVGAAIAIFCELASIPILPVALGIYLPISLNSAILTGGILRVLVERKF KKDEERKSESVEKGVLLASGLVAGDALIGIVIAVFATLNVNIAFGEKIMPKIANSNIVSFVIFILLGVWIYKFACSKKEV ACNKNEGANV
Specific function: Unknown
COG id: COG1297
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oligopeptide OPT transporter family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004814 - InterPro: IPR004813 [H]
Pfam domain/function: PF03169 OPT [H]
EC number: NA
Molecular weight: Translated: 68059; Mature: 67928
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNQKCKLAKEAYGGCKGENYEPFIPITEAMPETTGYSIILGIVMACLFAAANTYLGLKV CCCCCCCHHHHHCCCCCCCCCCCCEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEEE GLTIAAGIPGAILATGILKGLFRRNNILEANMVASLAAMGESIAGGIIFTLPALILWKFE CEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH LSITTIIIVTIIGGLMGTFFITPLRRFLIVEEHGELVYPESMAAAEVLVTGSQGGEGFKT HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEECCCHHHHEEEEEECCCCCCHHHH VVSGLGVGGAYKFLSGGFKLWNEQASYVFKSYQGTMISVDTLASLLGVGFIVGTKASLLM HHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCHHHHH FGGSVIAWFGLIPLIKYLGAGLAAPLFPSTKLIVDMTAPEIWSSYIKYIGAGAVAMGGFI HCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHH SLAKSMPTIIKSFKQAMGGIGHGGKEDTSRINIEAPITWVLGAAVFGFALTWLFPMIRGG HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCH FIGGLLAVLFSFFFAVVSARMVGIIGASNNPVSGMTIATLLFVTTILKLTGVVGNEGLRK HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH SILIGGVVCVAIAVAGGAAQSLKTTFIIGGTPKKVQIGMFIAIACSSGFAAIVVKMLHSA HHHHHHHHHHHHHHCCCCHHCCCEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHH YGIGSADVSAPQASLMKMLVEGIMSAKLPWTLVLVGAAIAIFCELASIPILPVALGIYLP CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEE ISLNSAILTGGILRVLVERKFKKDEERKSESVEKGVLLASGLVAGDALIGIVIAVFATLN EECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VNIAFGEKIMPKIANSNIVSFVIFILLGVWIYKFACSKKEVACNKNEGANV EEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure SNQKCKLAKEAYGGCKGENYEPFIPITEAMPETTGYSIILGIVMACLFAAANTYLGLKV CCCCCCHHHHHCCCCCCCCCCCCEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEEE GLTIAAGIPGAILATGILKGLFRRNNILEANMVASLAAMGESIAGGIIFTLPALILWKFE CEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH LSITTIIIVTIIGGLMGTFFITPLRRFLIVEEHGELVYPESMAAAEVLVTGSQGGEGFKT HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEECCCHHHHEEEEEECCCCCCHHHH VVSGLGVGGAYKFLSGGFKLWNEQASYVFKSYQGTMISVDTLASLLGVGFIVGTKASLLM HHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCHHHHH FGGSVIAWFGLIPLIKYLGAGLAAPLFPSTKLIVDMTAPEIWSSYIKYIGAGAVAMGGFI HCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHH SLAKSMPTIIKSFKQAMGGIGHGGKEDTSRINIEAPITWVLGAAVFGFALTWLFPMIRGG HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCH FIGGLLAVLFSFFFAVVSARMVGIIGASNNPVSGMTIATLLFVTTILKLTGVVGNEGLRK HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH SILIGGVVCVAIAVAGGAAQSLKTTFIIGGTPKKVQIGMFIAIACSSGFAAIVVKMLHSA HHHHHHHHHHHHHHCCCCHHCCCEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHH YGIGSADVSAPQASLMKMLVEGIMSAKLPWTLVLVGAAIAIFCELASIPILPVALGIYLP CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEE ISLNSAILTGGILRVLVERKFKKDEERKSESVEKGVLLASGLVAGDALIGIVIAVFATLN EECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VNIAFGEKIMPKIANSNIVSFVIFILLGVWIYKFACSKKEVACNKNEGANV EEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]