Definition Clostridium botulinum B1 str. Okra, complete genome.
Accession NC_010516
Length 3,958,233

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The map label for this gene is 170754696

Identifier: 170754696

GI number: 170754696

Start: 2693237

End: 2694421

Strand: Reverse

Name: 170754696

Synonym: CLD_2059

Alternate gene names: NA

Gene position: 2694421-2693237 (Counterclockwise)

Preceding gene: 170755696

Following gene: 170755513

Centisome position: 68.07

GC content: 30.38

Gene sequence:

>1185_bases
TTGGGTATATGGAATAAGATTAAAAGTTTAATTAAAGCACCATTCAAAACTAGTATCATAAGAGATTATAGTAGTGGGTT
TAGTTTTTTTAATAACGATTTAGCTACCAATGAAACTATATTCTCTGCCATATCGTTATTAAGTAATACAAAGGGGAGTT
TACCACTTAAACTATATAAAAATTATGAAGTTGTAAAACCTTCTGAAAATGAATTAGCAAGAATGATAGAGTATAATCCC
AATTCGTACATGACCATGTTCCAATGGGTAAGGTGCATGGAGACATTAAAAAATACTAAAGGAAATGCATATGCTATAAA
AGAGTATGATTGCATGAATCAGCCTATAAAAATGCATATTTTAAACCCTGATTTTGTAACACCAGTAATAGAAAAAGATA
CAAAGGATTTGTATTACGAAATCAGAGATGAAAATGGTTTAAGATATGTACATAATTCTCATATAATACATTTTAGCCAT
ATTTCTATGAATGGGTACAAAGGTATTAGCCCCTTGGATGTTTTACGAAATACCATTGATTATGATAGGGAAATTAAAGA
ATTTAGCTTAAATCAGATGAAAAACGGACTAAAAGCAAATTTGGTTATAAAATTAGGCGCTAAATTAAGTAAAGAATCTA
TGGACGAGTATACAGAAATGTTAGGAAAGTTTCAGAAGAATGGAATTCTTTTTGTGGATCAGGGAAAAGAATTCCAAGAA
CTTAAAAATTCAAGCTTCATAGATCCTAAGGTTTTTGATGTTGAAAATATAACTATAGCAAGAGTAGCGAGGGTTTATAA
TATACCATTGCACAAGTTACTAGCTGAAAAGCAGAGTTATTCTAGCGCTGAACAGGCAGATTTAGAATATATAAAAGATA
CCATTTTACCTGATATAAGACAGGATGAAGAAGAACTAAATAAGAAATTACTTACAGAGACTCAAAGAAATGAAGGATAC
TCTTGGAAATTTAATCTAAATGGTTTAGCCAGAGCAGATATGAAAACTAGAGGAGATTTTTATTTTAAAGGTATTAGGAG
TGCTTGGTTTACACCTAATGAAATAAGAGCTTTGGAAGAAATGCAACCGATAAAAGGTGGAGATCAATTATTTGTATCAA
GGGATTTGATTCCGATAGATAAAATTGATTTATTACTGAAAGGGGGTGAAAAGAATGGCAAATAA

Upstream 100 bases:

>100_bases
GGCCGCAACAATAGATGCTCATGTGAGAGGAATGGTTATGTTAGATGATGGGGCAGGAGATATATTTTATAGTCCAGATA
TATAGAGAGGAGGTGGAAGA

Downstream 100 bases:

>100_bases
GAAATTTTGGGAGGTTAAAAATTCCTCAGAAAATGAAAACATAGGAGAAACTTATATCTATGGTGATATAGTGTCTTATA
AATGGGATGATACTGATACA

Product: HK97 family phage portal protein

Products: NA

Alternate protein names: HK97 Family Phage Portal Protein; Portal Protein; Phage-Related Head Portal Protein; HK97 Family Portal Protein; Phage Portal; Prophage; Phage-Like Protein; Bacteriophage Portal Protein; HK97 Family Portal Protein ; Head Portal Protein; Phage Related Head Portal Protein; Phage Portal Protein HK; Protein RF

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MGIWNKIKSLIKAPFKTSIIRDYSSGFSFFNNDLATNETIFSAISLLSNTKGSLPLKLYKNYEVVKPSENELARMIEYNP
NSYMTMFQWVRCMETLKNTKGNAYAIKEYDCMNQPIKMHILNPDFVTPVIEKDTKDLYYEIRDENGLRYVHNSHIIHFSH
ISMNGYKGISPLDVLRNTIDYDREIKEFSLNQMKNGLKANLVIKLGAKLSKESMDEYTEMLGKFQKNGILFVDQGKEFQE
LKNSSFIDPKVFDVENITIARVARVYNIPLHKLLAEKQSYSSAEQADLEYIKDTILPDIRQDEEELNKKLLTETQRNEGY
SWKFNLNGLARADMKTRGDFYFKGIRSAWFTPNEIRALEEMQPIKGGDQLFVSRDLIPIDKIDLLLKGGEKNGK

Sequences:

>Translated_394_residues
MGIWNKIKSLIKAPFKTSIIRDYSSGFSFFNNDLATNETIFSAISLLSNTKGSLPLKLYKNYEVVKPSENELARMIEYNP
NSYMTMFQWVRCMETLKNTKGNAYAIKEYDCMNQPIKMHILNPDFVTPVIEKDTKDLYYEIRDENGLRYVHNSHIIHFSH
ISMNGYKGISPLDVLRNTIDYDREIKEFSLNQMKNGLKANLVIKLGAKLSKESMDEYTEMLGKFQKNGILFVDQGKEFQE
LKNSSFIDPKVFDVENITIARVARVYNIPLHKLLAEKQSYSSAEQADLEYIKDTILPDIRQDEEELNKKLLTETQRNEGY
SWKFNLNGLARADMKTRGDFYFKGIRSAWFTPNEIRALEEMQPIKGGDQLFVSRDLIPIDKIDLLLKGGEKNGK
>Mature_393_residues
GIWNKIKSLIKAPFKTSIIRDYSSGFSFFNNDLATNETIFSAISLLSNTKGSLPLKLYKNYEVVKPSENELARMIEYNPN
SYMTMFQWVRCMETLKNTKGNAYAIKEYDCMNQPIKMHILNPDFVTPVIEKDTKDLYYEIRDENGLRYVHNSHIIHFSHI
SMNGYKGISPLDVLRNTIDYDREIKEFSLNQMKNGLKANLVIKLGAKLSKESMDEYTEMLGKFQKNGILFVDQGKEFQEL
KNSSFIDPKVFDVENITIARVARVYNIPLHKLLAEKQSYSSAEQADLEYIKDTILPDIRQDEEELNKKLLTETQRNEGYS
WKFNLNGLARADMKTRGDFYFKGIRSAWFTPNEIRALEEMQPIKGGDQLFVSRDLIPIDKIDLLLKGGEKNGK

Specific function: Unknown

COG id: COG4695

COG function: function code S; Phage-related protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45610; Mature: 45479

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIWNKIKSLIKAPFKTSIIRDYSSGFSFFNNDLATNETIFSAISLLSNTKGSLPLKLYK
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEC
NYEVVKPSENELARMIEYNPNSYMTMFQWVRCMETLKNTKGNAYAIKEYDCMNQPIKMHI
CEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCEEEEE
LNPDFVTPVIEKDTKDLYYEIRDENGLRYVHNSHIIHFSHISMNGYKGISPLDVLRNTID
ECCCHHCHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHH
YDREIKEFSLNQMKNGLKANLVIKLGAKLSKESMDEYTEMLGKFQKNGILFVDQGKEFQE
HHHHHHHHHHHHHHCCCCEEEEEEECCHHCHHHHHHHHHHHHHHHHCCEEEEECCCHHHH
LKNSSFIDPKVFDVENITIARVARVYNIPLHKLLAEKQSYSSAEQADLEYIKDTILPDIR
HCCCCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
QDEEELNKKLLTETQRNEGYSWKFNLNGLARADMKTRGDFYFKGIRSAWFTPNEIRALEE
CCHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCHHCCCHHHHHHHHHCCCHHHHHHHHH
MQPIKGGDQLFVSRDLIPIDKIDLLLKGGEKNGK
HCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure 
GIWNKIKSLIKAPFKTSIIRDYSSGFSFFNNDLATNETIFSAISLLSNTKGSLPLKLYK
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEC
NYEVVKPSENELARMIEYNPNSYMTMFQWVRCMETLKNTKGNAYAIKEYDCMNQPIKMHI
CEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCEEEEE
LNPDFVTPVIEKDTKDLYYEIRDENGLRYVHNSHIIHFSHISMNGYKGISPLDVLRNTID
ECCCHHCHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHH
YDREIKEFSLNQMKNGLKANLVIKLGAKLSKESMDEYTEMLGKFQKNGILFVDQGKEFQE
HHHHHHHHHHHHHHCCCCEEEEEEECCHHCHHHHHHHHHHHHHHHHCCEEEEECCCHHHH
LKNSSFIDPKVFDVENITIARVARVYNIPLHKLLAEKQSYSSAEQADLEYIKDTILPDIR
HCCCCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
QDEEELNKKLLTETQRNEGYSWKFNLNGLARADMKTRGDFYFKGIRSAWFTPNEIRALEE
CCHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCHHCCCHHHHHHHHHCCCHHHHHHHHH
MQPIKGGDQLFVSRDLIPIDKIDLLLKGGEKNGK
HCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA