| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is ytfP [H]
Identifier: 170754437
GI number: 170754437
Start: 1929607
End: 1930830
Strand: Reverse
Name: ytfP [H]
Synonym: CLD_2830
Alternate gene names: 170754437
Gene position: 1930830-1929607 (Counterclockwise)
Preceding gene: 170755179
Following gene: 170756396
Centisome position: 48.78
GC content: 27.04
Gene sequence:
>1224_bases GTGTCAAAAATTATAGTAATAGGCGGTGGCCCTGCTGGTATGATGGCAGCAATTAAAGCAGCAGAAAAACATGATGTTAT ATTAATAGAAAGAAATGAAAAGCTAGGGAAAAAATTATATATAACTGGAAAAGGTAGATGTAACGTAACAAGTTCTAAAG ATATAAGTGAATTTTTTGATTATATTCCAACTAATCCTTATTTTTTATATAGTCCTTTATATACTTTCACCAATGAAGAT GCTATTAAATTTTTTAATGATAGAAATATTAAATTAAAAGTAGAAAGAGGAGATAGAGTATTTCCTTCTTCAGATAAATC TTCAGATATAATATATGCTTTAGAAAAAGAACTTATAGAAAGAAATGTAAAGATATTACTTAATAAAAGAATAACAAGAA TTTATAAAGAAGATTCAAACATAAAGTATGTGGAAACAGAAAAAAGAGAAAAGATAAAGGGAGATTATTTTATATTATGT ACCGGAGGAGTATCCTATCCTCAAACAGGCTCCGAAGGTGATGGACATAAAATAGCAAAAAAATTAGGCCATAATATAAA AGAATTAAAACCATCTTTAGTTCCCCTAGAAACAAAAGAAGAATGGGTAAAAGACTTACAAGGACTGGCATTAAAAAATG TAGAAATAAAAATTATAGACTCTAAAAATAAAACATTATATAAAAATTTTGGAGAAATGCTATTTACTCATTTTGGCATA TCTGGTCCTATTGTGCTCACAGCTAGTAGTGTAATAGATAGAGATAATTTAAAAGTCTTCATAAATTTAAAACCTGCTCT TTCATCTAATGATTTAGATGAAAGAATACAAAAAGATTTTAAAAAATATTGCAATAAGGATTTTAGTAACTCTCTAAATG ATTTATTACCTAAAAAACTTATAGATATTATAATAAACTTAAGTAAAATAGATCCAAATAAAAAAGTAAACTCCATTACA AAAGAAGAAAGAAAAAGTTTAGTGTATCTATTACAAAATTTACCGTTAACCGTAAAAGGTAAAAGGCCTATAAAAGAAGC TATAGTAACTTCTGGAGGTGTTGATGTGCTAAATATAGACCCGTCTACTATGAAATCTAAAATAGTAAATAATTTATATT TTGCAGGAGAGTTAATAGACGTAGATGCTTTTACTGGTGGATTTAATATACAAATAGCTCTATCTACAGGTTATTTGGCT GGTTTAAAGGTAGGTGAAAATTGA
Upstream 100 bases:
>100_bases TGATCCATGTAATAAATATCTTTTTATTATAAAATATATATTTATAGTAATGAATTTATTATATAATAAGTACTAGAAAA TAAAACTTAGAGGTGATAAG
Downstream 100 bases:
>100_bases TGCAGTCTATAAGAGGGGCTATAACTATAGAAAAAAATGAAGTGAAACATATTGAAGAAGCTTCAATAAAACTTTTTTCA GAAATATTAGCAAGAAACAA
Product: pyridine nucleotide-disulphide oxidoreductase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MSKIIVIGGGPAGMMAAIKAAEKHDVILIERNEKLGKKLYITGKGRCNVTSSKDISEFFDYIPTNPYFLYSPLYTFTNED AIKFFNDRNIKLKVERGDRVFPSSDKSSDIIYALEKELIERNVKILLNKRITRIYKEDSNIKYVETEKREKIKGDYFILC TGGVSYPQTGSEGDGHKIAKKLGHNIKELKPSLVPLETKEEWVKDLQGLALKNVEIKIIDSKNKTLYKNFGEMLFTHFGI SGPIVLTASSVIDRDNLKVFINLKPALSSNDLDERIQKDFKKYCNKDFSNSLNDLLPKKLIDIIINLSKIDPNKKVNSIT KEERKSLVYLLQNLPLTVKGKRPIKEAIVTSGGVDVLNIDPSTMKSKIVNNLYFAGELIDVDAFTGGFNIQIALSTGYLA GLKVGEN
Sequences:
>Translated_407_residues MSKIIVIGGGPAGMMAAIKAAEKHDVILIERNEKLGKKLYITGKGRCNVTSSKDISEFFDYIPTNPYFLYSPLYTFTNED AIKFFNDRNIKLKVERGDRVFPSSDKSSDIIYALEKELIERNVKILLNKRITRIYKEDSNIKYVETEKREKIKGDYFILC TGGVSYPQTGSEGDGHKIAKKLGHNIKELKPSLVPLETKEEWVKDLQGLALKNVEIKIIDSKNKTLYKNFGEMLFTHFGI SGPIVLTASSVIDRDNLKVFINLKPALSSNDLDERIQKDFKKYCNKDFSNSLNDLLPKKLIDIIINLSKIDPNKKVNSIT KEERKSLVYLLQNLPLTVKGKRPIKEAIVTSGGVDVLNIDPSTMKSKIVNNLYFAGELIDVDAFTGGFNIQIALSTGYLA GLKVGEN >Mature_406_residues SKIIVIGGGPAGMMAAIKAAEKHDVILIERNEKLGKKLYITGKGRCNVTSSKDISEFFDYIPTNPYFLYSPLYTFTNEDA IKFFNDRNIKLKVERGDRVFPSSDKSSDIIYALEKELIERNVKILLNKRITRIYKEDSNIKYVETEKREKIKGDYFILCT GGVSYPQTGSEGDGHKIAKKLGHNIKELKPSLVPLETKEEWVKDLQGLALKNVEIKIIDSKNKTLYKNFGEMLFTHFGIS GPIVLTASSVIDRDNLKVFINLKPALSSNDLDERIQKDFKKYCNKDFSNSLNDLLPKKLIDIIINLSKIDPNKKVNSITK EERKSLVYLLQNLPLTVKGKRPIKEAIVTSGGVDVLNIDPSTMKSKIVNNLYFAGELIDVDAFTGGFNIQIALSTGYLAG LKVGEN
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI2367234, Length=383, Percent_Identity=29.5039164490862, Blast_Score=165, Evalue=6e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 45757; Mature: 45625
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIIVIGGGPAGMMAAIKAAEKHDVILIERNEKLGKKLYITGKGRCNVTSSKDISEFFD CCEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCEEECCCCCCHHHHHH YIPTNPYFLYSPLYTFTNEDAIKFFNDRNIKLKVERGDRVFPSSDKSSDIIYALEKELIE HCCCCCEEEECCCEECCCCCCEEEECCCCEEEEEECCCEECCCCCCCCCHHHHHHHHHHH RNVKILLNKRITRIYKEDSNIKYVETEKREKIKGDYFILCTGGVSYPQTGSEGDGHKIAK CHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHH KLGHNIKELKPSLVPLETKEEWVKDLQGLALKNVEIKIIDSKNKTLYKNFGEMLFTHFGI HHCCCHHHCCCCCCCCCCHHHHHHHHHCCEECCEEEEEEECCCCHHHHHHHHHHHHHCCC SGPIVLTASSVIDRDNLKVFINLKPALSSNDLDERIQKDFKKYCNKDFSNSLNDLLPKKL CCCEEEEEHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH IDIIINLSKIDPNKKVNSITKEERKSLVYLLQNLPLTVKGKRPIKEAIVTSGGVDVLNID HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCCEEEEECC PSTMKSKIVNNLYFAGELIDVDAFTGGFNIQIALSTGYLAGLKVGEN HHHHHHHHHHHHEEECEEEEEEEECCCEEEEEEEECCCEEEEEECCC >Mature Secondary Structure SKIIVIGGGPAGMMAAIKAAEKHDVILIERNEKLGKKLYITGKGRCNVTSSKDISEFFD CEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCEEECCCCCCHHHHHH YIPTNPYFLYSPLYTFTNEDAIKFFNDRNIKLKVERGDRVFPSSDKSSDIIYALEKELIE HCCCCCEEEECCCEECCCCCCEEEECCCCEEEEEECCCEECCCCCCCCCHHHHHHHHHHH RNVKILLNKRITRIYKEDSNIKYVETEKREKIKGDYFILCTGGVSYPQTGSEGDGHKIAK CHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHH KLGHNIKELKPSLVPLETKEEWVKDLQGLALKNVEIKIIDSKNKTLYKNFGEMLFTHFGI HHCCCHHHCCCCCCCCCCHHHHHHHHHCCEECCEEEEEEECCCCHHHHHHHHHHHHHCCC SGPIVLTASSVIDRDNLKVFINLKPALSSNDLDERIQKDFKKYCNKDFSNSLNDLLPKKL CCCEEEEEHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH IDIIINLSKIDPNKKVNSITKEERKSLVYLLQNLPLTVKGKRPIKEAIVTSGGVDVLNID HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCCEEEEECC PSTMKSKIVNNLYFAGELIDVDAFTGGFNIQIALSTGYLAGLKVGEN HHHHHHHHHHHHEEECEEEEEEEECCCEEEEEEEECCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]