Click here to switch to the map view.

The map label for this gene is ydaK [H]

Identifier: 170754422

GI number: 170754422

Start: 1426349

End: 1427092

Strand: Direct

Name: ydaK [H]

Synonym: CLD_3272

Alternate gene names: 170754422

Gene position: 1426349-1427092 (Clockwise)

Preceding gene: 170757072

Following gene: 170755710

Centisome position: 36.03

GC content: 25.94

Gene sequence:

>744_bases
ATGTTAAATTTTATAATGTTGGGTTCCTTATTTATGGTGACAATAGCGGCTTATTTCAGAGGTATAGTTGAAGGTTTTTT
ATTTAGTGCTATGATTATATTTTTTTATGTTACTTTTATAATTTATAATAATACAATTCATAGAAATCCGGTAGAACTTA
TTACTTATATCTGGATGGTAGACATACCTTTAAGTGCTTTTATATCCGGAAAACTATCTGAAAATATAAATTTAATTCAA
AGTATAAATACAAGGCTACAAAAGGAATATAGAGATTTAATAACCATTGATAGAACTACTGGTCTTAGCAATTTAAAAGG
ATTTTATATAGATTTGGATAGGGAAATGAGTAAAGCCAAAAGGCATAAATTGAATCTATCTCTTATGATAGTAAAAATAC
AGTATTATGATGAACTTAATGCTATTTTAGGAGAGAAAAAAATGGAAGAAATTTTAAAGATTATCAGCAATGTTATAACC
TTAGCAATTAGGGGAGAAGATATTAGCTATAAATTAAATAAAGATACTCTTGCAATACTTATGCCTAGTACAAATCTTCA
AGGTGCTGAGGTGGTAAAAAACAGAATAAAGGAAAGTATTAGTGAAGAAAACCTGAAAATAAAACAAGAAGATAAAAATG
TTAATATTGATATAAAAGTAGGAATAGTAGAATATAAAAATACTATAAAAGAAGCTTTTGAGTTTAAAGAATTAGCAGAA
AAGGAATTAGAATACGATGTATAA

Upstream 100 bases:

>100_bases
GAGTAGGTTTTCTAAAAATATAGATATATGCATAATTATTTTGTTATTGAACCTTTTTTGTATATATAGTTTTATATATT
TTAATTTGGGAAAAAATATT

Downstream 100 bases:

>100_bases
GAAAATAACTATTTACTTTATGATATTTTTTTTACTATTCACAAATGCAAATTGTAAAGTTAAAGCAGCAGATAGTGATA
AAAAAGAAAAAGTTTTAATA

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MLNFIMLGSLFMVTIAAYFRGIVEGFLFSAMIIFFYVTFIIYNNTIHRNPVELITYIWMVDIPLSAFISGKLSENINLIQ
SINTRLQKEYRDLITIDRTTGLSNLKGFYIDLDREMSKAKRHKLNLSLMIVKIQYYDELNAILGEKKMEEILKIISNVIT
LAIRGEDISYKLNKDTLAILMPSTNLQGAEVVKNRIKESISEENLKIKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAE
KELEYDV

Sequences:

>Translated_247_residues
MLNFIMLGSLFMVTIAAYFRGIVEGFLFSAMIIFFYVTFIIYNNTIHRNPVELITYIWMVDIPLSAFISGKLSENINLIQ
SINTRLQKEYRDLITIDRTTGLSNLKGFYIDLDREMSKAKRHKLNLSLMIVKIQYYDELNAILGEKKMEEILKIISNVIT
LAIRGEDISYKLNKDTLAILMPSTNLQGAEVVKNRIKESISEENLKIKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAE
KELEYDV
>Mature_247_residues
MLNFIMLGSLFMVTIAAYFRGIVEGFLFSAMIIFFYVTFIIYNNTIHRNPVELITYIWMVDIPLSAFISGKLSENINLIQ
SINTRLQKEYRDLITIDRTTGLSNLKGFYIDLDREMSKAKRHKLNLSLMIVKIQYYDELNAILGEKKMEEILKIISNVIT
LAIRGEDISYKLNKDTLAILMPSTNLQGAEVVKNRIKESISEENLKIKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAE
KELEYDV

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 28628; Mature: 28628

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNFIMLGSLFMVTIAAYFRGIVEGFLFSAMIIFFYVTFIIYNNTIHRNPVELITYIWMV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
DIPLSAFISGKLSENINLIQSINTRLQKEYRDLITIDRTTGLSNLKGFYIDLDREMSKAK
HCCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEEECHHHHHHH
RHKLNLSLMIVKIQYYDELNAILGEKKMEEILKIISNVITLAIRGEDISYKLNKDTLAIL
HHHCCEEEEEEEEEHHHHHHHHHCHHHHHHHHHHHHHHHEEEEECCCEEEEECCCEEEEE
MPSTNLQGAEVVKNRIKESISEENLKIKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAE
ECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHH
KELEYDV
HHHCCCC
>Mature Secondary Structure
MLNFIMLGSLFMVTIAAYFRGIVEGFLFSAMIIFFYVTFIIYNNTIHRNPVELITYIWMV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
DIPLSAFISGKLSENINLIQSINTRLQKEYRDLITIDRTTGLSNLKGFYIDLDREMSKAK
HCCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEEECHHHHHHH
RHKLNLSLMIVKIQYYDELNAILGEKKMEEILKIISNVITLAIRGEDISYKLNKDTLAIL
HHHCCEEEEEEEEEHHHHHHHHHCHHHHHHHHHHHHHHHEEEEECCCEEEEECCCEEEEE
MPSTNLQGAEVVKNRIKESISEENLKIKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAE
ECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHH
KELEYDV
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]