Definition Clostridium botulinum B1 str. Okra, complete genome.
Accession NC_010516
Length 3,958,233

Click here to switch to the map view.

The map label for this gene is yabG [H]

Identifier: 170754325

GI number: 170754325

Start: 151280

End: 152182

Strand: Direct

Name: yabG [H]

Synonym: CLD_0671

Alternate gene names: 170754325

Gene position: 151280-152182 (Clockwise)

Preceding gene: 170755418

Following gene: 170756966

Centisome position: 3.82

GC content: 29.79

Gene sequence:

>903_bases
ATGGAAATAGGAGATATAGTTGTAAGAAAATCTTATAAAAAAGACATAACATTTAAAATAATAGATATAAAGCAAGAGCA
AGGCAGAGAAATATATACTTTGAAAGGTGTAAATGTAAGAATAATAGCAGATTCTCCATATGAAGATTTAGAAGAAGTAT
CAGTAGCTACCATGACTAAGAAGGAAGAGGTTTTTACTAGCAAAGTTAACGACTCTATAAAAAAAATATTAGATGATAGA
AAATTTAGAGGGGGGGATAAGGGAAAGCACTTAAATAAAAAAAGTAAGATAGAGAAAATGTATAGAACAAATAAAAATAT
AAAAACTAAAGAATTGTATTTTGGGAGACCAGGTAAAATTCTTCATATAGATGGAGACTCAGAATACTTAGATACCTGTC
TTAAGGTATACAAGCAATTGCAGTTAGATGTGGTAGGAGAGAAAGTTTTAGAGAAGGAGCAACCCGATAAGATATTAAGC
TTAGTTAAGCTATACAAACCTGATATTGTGGTTATAACAGGCCATGATGCCGTATTAAAAGAAACGGAAAATTATACAGA
TATAAATAACTATAGAAATTCTAAATATTTTGTTAAAACTGTAGGTGTTTTAAGAGATTATGAAAGAAATTATGATGATT
TAATTATATTTGCCGGAGCTTGTCAATCTTGCTATGAAGCTATATTAGATGCAGGAGCTAATTATGCTAGTTCTCCAGGG
AGGGTTTTAATACATTGTTTAGATCCAGTATTTTTATGTGAAAAAATAGCATACACAAACATAAGTAATATAGTATCCAT
AGAAGATGCCTTAGAAAATACAATAACAGGTATAAAGGGAATTGGTGGATTGCAAACTAGAGGAAAATATAGAGAAGGAT
TTCCTAAATCGGAATATGTATAG

Upstream 100 bases:

>100_bases
CTTATGTAGTTTTATATGCCTTAAATAGTTTTATTAACAAATTTATTATAAGTATCATAGTATATAGGGTGATTGATTTA
TTAAGGTGGAGCTAAATTAT

Downstream 100 bases:

>100_bases
AGATTTATAAAATTTTGAATATATATATAAATTTAAGGTAATATTAATAATAATAAGAAATTTTAAAAAAAATCTAAATA
TTTATGTGAAAAATAATATT

Product: peptidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MEIGDIVVRKSYKKDITFKIIDIKQEQGREIYTLKGVNVRIIADSPYEDLEEVSVATMTKKEEVFTSKVNDSIKKILDDR
KFRGGDKGKHLNKKSKIEKMYRTNKNIKTKELYFGRPGKILHIDGDSEYLDTCLKVYKQLQLDVVGEKVLEKEQPDKILS
LVKLYKPDIVVITGHDAVLKETENYTDINNYRNSKYFVKTVGVLRDYERNYDDLIIFAGACQSCYEAILDAGANYASSPG
RVLIHCLDPVFLCEKIAYTNISNIVSIEDALENTITGIKGIGGLQTRGKYREGFPKSEYV

Sequences:

>Translated_300_residues
MEIGDIVVRKSYKKDITFKIIDIKQEQGREIYTLKGVNVRIIADSPYEDLEEVSVATMTKKEEVFTSKVNDSIKKILDDR
KFRGGDKGKHLNKKSKIEKMYRTNKNIKTKELYFGRPGKILHIDGDSEYLDTCLKVYKQLQLDVVGEKVLEKEQPDKILS
LVKLYKPDIVVITGHDAVLKETENYTDINNYRNSKYFVKTVGVLRDYERNYDDLIIFAGACQSCYEAILDAGANYASSPG
RVLIHCLDPVFLCEKIAYTNISNIVSIEDALENTITGIKGIGGLQTRGKYREGFPKSEYV
>Mature_300_residues
MEIGDIVVRKSYKKDITFKIIDIKQEQGREIYTLKGVNVRIIADSPYEDLEEVSVATMTKKEEVFTSKVNDSIKKILDDR
KFRGGDKGKHLNKKSKIEKMYRTNKNIKTKELYFGRPGKILHIDGDSEYLDTCLKVYKQLQLDVVGEKVLEKEQPDKILS
LVKLYKPDIVVITGHDAVLKETENYTDINNYRNSKYFVKTVGVLRDYERNYDDLIIFAGACQSCYEAILDAGANYASSPG
RVLIHCLDPVFLCEKIAYTNISNIVSIEDALENTITGIKGIGGLQTRGKYREGFPKSEYV

Specific function: Cleaves the spore coat proteins spoIVA and safA. May cooperate with tgl to mediate the temperature-dependent cross- linking of coat proteins like gerQ [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Forespore outer membrane. Note=Synthesized in the mother cell compartment and assembled on the surface of the forespore [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U57 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008764
- ProDom:   PD127708 [H]

Pfam domain/function: PF05582 Peptidase_U57 [H]

EC number: NA

Molecular weight: Translated: 34208; Mature: 34208

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIGDIVVRKSYKKDITFKIIDIKQEQGREIYTLKGVNVRIIADSPYEDLEEVSVATMTK
CCCCHHHHHHCCCCCCEEEEEEEEHHCCCEEEEEECCEEEEEECCCHHHHHHHHHHHHHH
KEEVFTSKVNDSIKKILDDRKFRGGDKGKHLNKKSKIEKMYRTNKNIKTKELYFGRPGKI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCE
LHIDGDSEYLDTCLKVYKQLQLDVVGEKVLEKEQPDKILSLVKLYKPDIVVITGHDAVLK
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCHHHHH
ETENYTDINNYRNSKYFVKTVGVLRDYERNYDDLIIFAGACQSCYEAILDAGANYASSPG
CCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCC
RVLIHCLDPVFLCEKIAYTNISNIVSIEDALENTITGIKGIGGLQTRGKYREGFPKSEYV
CEEEEHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCC
>Mature Secondary Structure
MEIGDIVVRKSYKKDITFKIIDIKQEQGREIYTLKGVNVRIIADSPYEDLEEVSVATMTK
CCCCHHHHHHCCCCCCEEEEEEEEHHCCCEEEEEECCEEEEEECCCHHHHHHHHHHHHHH
KEEVFTSKVNDSIKKILDDRKFRGGDKGKHLNKKSKIEKMYRTNKNIKTKELYFGRPGKI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCE
LHIDGDSEYLDTCLKVYKQLQLDVVGEKVLEKEQPDKILSLVKLYKPDIVVITGHDAVLK
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCHHHHH
ETENYTDINNYRNSKYFVKTVGVLRDYERNYDDLIIFAGACQSCYEAILDAGANYASSPG
CCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCC
RVLIHCLDPVFLCEKIAYTNISNIVSIEDALENTITGIKGIGGLQTRGKYREGFPKSEYV
CEEEEHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]