| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is hbpA [H]
Identifier: 170751148
GI number: 170751148
Start: 5077162
End: 5078781
Strand: Reverse
Name: hbpA [H]
Synonym: Mrad2831_4764
Alternate gene names: 170751148
Gene position: 5078781-5077162 (Counterclockwise)
Preceding gene: 170751149
Following gene: 170751147
Centisome position: 83.56
GC content: 67.78
Gene sequence:
>1620_bases ATGCGCCTGACCAAACGCACGCTCCTCGGCGCCGGCCTCTCGGTCCTCGCCGCGCCCCTGACGGCCCCGATCCTCGACCT GCCGAAGGCGCTGGCCGACGACGCGATCGCGCCGCTGGTGATCGGCACCAACCAAGTGCCGCGCCACTTCAACGGCGCCG TGCAGTCCGGCATCGCCACCGGGATGGTCTCGACGCAGATCTTCGCGAGCCCGCTGCGCTACGACGATCAGTGGAACCCG CAACCCTATCTGGCGAAATCCTGGACTATCGCCCCCGACAACTTGAGCGTGACGCTCCACCTCGTAGAGGACGCCGTCTT CCACGACGGGCACCCGCTCACCGCGGAGGATGTCGCCTTCTCGATCGGGGTGATCAAGGCCAACCATCCGTTCCAGACCA TGCTGGAGCCGGTCTCGACGGTCGAGACCCCCGACGCCCACACGGTCATCATCCGGCTCGCGCGCCCGCACCCGGCGCTG CTGCTGGCCATGTCGCCCGGCCTGATGCCGATCCTGCCCAAGCACGTCTACGGCGACGGCCAGGACATCAAGACCCATCC GGCCAACCTGAAGCCCGTCGGATCGGGGCCGTTCAAGTTCGTCGAGTACAAGCAGGGCGAGTCGATCCAGCTCGAGCGGT TCGACCGGTTCTTCATCCCCGGGCGGCCCAAGCTGGCGCGGCTCGTCTACCGGATCCTGCCGGACCAGAACAGCCTCGTC ATCGCCACCGAGCGGCGCGAGATCGGCATGCTGCCGTTCCTGTCCTCGGTGCGGGACATCGAGCGCCTCGCCAAGGCGCC GACCCTGACGGTGACGGATCGCGGCTTCGAGGGGATCGGCCCGATCAACTGGCTGGCCTTCAACTGCGGGAAGAAGCCCC TCGACGACGTGCGCGTCCGTCGGGCCATCGCGCTGGCGGCCAACCGCGCTTTCATCACCGGCAAGCTGCTCGGCGGCGTG GCGAAACCCGCCACCGGCCCGATCGTGCCGGGCTCGCCGTTCTACGAGCCGGCCGTCGACCTCTACACGCTCGACATCGC CAAGGCGGACGCCCTGCTCGACGAGGCCGGGCTGAAGAAGGGGCCGGACGGCACGCGGTTCCCGCTCACCATCGACTACA TCCCCAACGACAACGACCAGCAGCGCAACGTCGCCGAGTACCTGCGGGCCGGCCTCAAGCGGATCGGCATCGCCCTTCAG GTCCGGGCCGCGCCGGACTTCCCGACCTGGGCGCAGCGCGTCTCCAACTTCGACTTCGACCTGACCATGGACAACGTCTT CAACTGGGGCGACCCGGTGATCGGCGTGGCGCGGACCTACCTGTCGACCAACATCCGCAAGGGCGTCATCTGGTCGAACA CGCAGCAGTACAAGAATCCGAAGGTCGACGAGCTGCTAAACGCCGCCGCGGTCGAGACCGACCTGGAGAAGCGCAAGGCG CTCTACAGCGAATTCCAGAAGATCGTCGTGTCCGAGGCGCCGATCGCCTATATCAACCTCACCCCCTACAAGGCGGTCTA CGACAAGCGCCTGACGAACCTGCCCCTGTCGATCTGGGGGCCGCTCTCGCCCCTCGACGAGGTCGCCTGGGCGCAGGGCG CCGCCGGAGCCGAGCGATGA
Upstream 100 bases:
>100_bases TCGGCATCGCGGCGACCGATCCCGAAGCCGGCCCGGCGCTGGCCGGCCTCCTCGACGCCGCGCTGCGACCCCCGCAAACC CCACACGGAGACCGAACCCG
Downstream 100 bases:
>100_bases CGGGCCTGCGCAGGCTCGGCGCGACGGCGGCGAACGCCGCCGGCCTGCTGCTCGCCGTGGTGGTGCTGAACTTCCTGCTG ATCCAGGCGGCGCCGGGCGA
Product: extracellular solute-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: Hemin-binding lipoprotein [H]
Number of amino acids: Translated: 539; Mature: 539
Protein sequence:
>539_residues MRLTKRTLLGAGLSVLAAPLTAPILDLPKALADDAIAPLVIGTNQVPRHFNGAVQSGIATGMVSTQIFASPLRYDDQWNP QPYLAKSWTIAPDNLSVTLHLVEDAVFHDGHPLTAEDVAFSIGVIKANHPFQTMLEPVSTVETPDAHTVIIRLARPHPAL LLAMSPGLMPILPKHVYGDGQDIKTHPANLKPVGSGPFKFVEYKQGESIQLERFDRFFIPGRPKLARLVYRILPDQNSLV IATERREIGMLPFLSSVRDIERLAKAPTLTVTDRGFEGIGPINWLAFNCGKKPLDDVRVRRAIALAANRAFITGKLLGGV AKPATGPIVPGSPFYEPAVDLYTLDIAKADALLDEAGLKKGPDGTRFPLTIDYIPNDNDQQRNVAEYLRAGLKRIGIALQ VRAAPDFPTWAQRVSNFDFDLTMDNVFNWGDPVIGVARTYLSTNIRKGVIWSNTQQYKNPKVDELLNAAAVETDLEKRKA LYSEFQKIVVSEAPIAYINLTPYKAVYDKRLTNLPLSIWGPLSPLDEVAWAQGAAGAER
Sequences:
>Translated_539_residues MRLTKRTLLGAGLSVLAAPLTAPILDLPKALADDAIAPLVIGTNQVPRHFNGAVQSGIATGMVSTQIFASPLRYDDQWNP QPYLAKSWTIAPDNLSVTLHLVEDAVFHDGHPLTAEDVAFSIGVIKANHPFQTMLEPVSTVETPDAHTVIIRLARPHPAL LLAMSPGLMPILPKHVYGDGQDIKTHPANLKPVGSGPFKFVEYKQGESIQLERFDRFFIPGRPKLARLVYRILPDQNSLV IATERREIGMLPFLSSVRDIERLAKAPTLTVTDRGFEGIGPINWLAFNCGKKPLDDVRVRRAIALAANRAFITGKLLGGV AKPATGPIVPGSPFYEPAVDLYTLDIAKADALLDEAGLKKGPDGTRFPLTIDYIPNDNDQQRNVAEYLRAGLKRIGIALQ VRAAPDFPTWAQRVSNFDFDLTMDNVFNWGDPVIGVARTYLSTNIRKGVIWSNTQQYKNPKVDELLNAAAVETDLEKRKA LYSEFQKIVVSEAPIAYINLTPYKAVYDKRLTNLPLSIWGPLSPLDEVAWAQGAAGAER >Mature_539_residues MRLTKRTLLGAGLSVLAAPLTAPILDLPKALADDAIAPLVIGTNQVPRHFNGAVQSGIATGMVSTQIFASPLRYDDQWNP QPYLAKSWTIAPDNLSVTLHLVEDAVFHDGHPLTAEDVAFSIGVIKANHPFQTMLEPVSTVETPDAHTVIIRLARPHPAL LLAMSPGLMPILPKHVYGDGQDIKTHPANLKPVGSGPFKFVEYKQGESIQLERFDRFFIPGRPKLARLVYRILPDQNSLV IATERREIGMLPFLSSVRDIERLAKAPTLTVTDRGFEGIGPINWLAFNCGKKPLDDVRVRRAIALAANRAFITGKLLGGV AKPATGPIVPGSPFYEPAVDLYTLDIAKADALLDEAGLKKGPDGTRFPLTIDYIPNDNDQQRNVAEYLRAGLKRIGIALQ VRAAPDFPTWAQRVSNFDFDLTMDNVFNWGDPVIGVARTYLSTNIRKGVIWSNTQQYKNPKVDELLNAAAVETDLEKRKA LYSEFQKIVVSEAPIAYINLTPYKAVYDKRLTNLPLSIWGPLSPLDEVAWAQGAAGAER
Specific function: Important role in heme acquisition or metabolism [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Lipid-anchor [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1789966, Length=524, Percent_Identity=26.3358778625954, Blast_Score=142, Evalue=4e-35, Organism=Escherichia coli, GI1787762, Length=446, Percent_Identity=26.2331838565022, Blast_Score=116, Evalue=4e-27, Organism=Escherichia coli, GI1787052, Length=449, Percent_Identity=25.1670378619154, Blast_Score=111, Evalue=9e-26, Organism=Escherichia coli, GI1787495, Length=538, Percent_Identity=25.2788104089219, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1787551, Length=528, Percent_Identity=24.2424242424242, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI1789397, Length=543, Percent_Identity=26.5193370165746, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1789887, Length=494, Percent_Identity=23.6842105263158, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI87082063, Length=393, Percent_Identity=25.4452926208651, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 59162; Mature: 59162
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLTKRTLLGAGLSVLAAPLTAPILDLPKALADDAIAPLVIGTNQVPRHFNGAVQSGIAT CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH GMVSTQIFASPLRYDDQWNPQPYLAKSWTIAPDNLSVTLHLVEDAVFHDGHPLTAEDVAF HHHHHHHHHHCCCCCCCCCCCCCEECEEEECCCCCEEEEEEEEHHHHCCCCCCCHHHHEE SIGVIKANHPFQTMLEPVSTVETPDAHTVIIRLARPHPALLLAMSPGLMPILPKHVYGDG EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCHHHCCCC QDIKTHPANLKPVGSGPFKFVEYKQGESIQLERFDRFFIPGRPKLARLVYRILPDQNSLV CCCCCCCCCCCCCCCCCEEEEEECCCCCEEHHHCCEECCCCCHHHHHHHHHHCCCCCCEE IATERREIGMLPFLSSVRDIERLAKAPTLTVTDRGFEGIGPINWLAFNCGKKPLDDVRVR EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHH RAIALAANRAFITGKLLGGVAKPATGPIVPGSPFYEPAVDLYTLDIAKADALLDEAGLKK HHHHHHHCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCC GPDGTRFPLTIDYIPNDNDQQRNVAEYLRAGLKRIGIALQVRAAPDFPTWAQRVSNFDFD CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHCCCCCE LTMDNVFNWGDPVIGVARTYLSTNIRKGVIWSNTQQYKNPKVDELLNAAAVETDLEKRKA EEHHCCCCCCCCHHHHHHHHHHHCCCCCEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHH LYSEFQKIVVSEAPIAYINLTPYKAVYDKRLTNLPLSIWGPLSPLDEVAWAQGAAGAER HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCCCCC >Mature Secondary Structure MRLTKRTLLGAGLSVLAAPLTAPILDLPKALADDAIAPLVIGTNQVPRHFNGAVQSGIAT CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH GMVSTQIFASPLRYDDQWNPQPYLAKSWTIAPDNLSVTLHLVEDAVFHDGHPLTAEDVAF HHHHHHHHHHCCCCCCCCCCCCCEECEEEECCCCCEEEEEEEEHHHHCCCCCCCHHHHEE SIGVIKANHPFQTMLEPVSTVETPDAHTVIIRLARPHPALLLAMSPGLMPILPKHVYGDG EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCHHHCCCC QDIKTHPANLKPVGSGPFKFVEYKQGESIQLERFDRFFIPGRPKLARLVYRILPDQNSLV CCCCCCCCCCCCCCCCCEEEEEECCCCCEEHHHCCEECCCCCHHHHHHHHHHCCCCCCEE IATERREIGMLPFLSSVRDIERLAKAPTLTVTDRGFEGIGPINWLAFNCGKKPLDDVRVR EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHH RAIALAANRAFITGKLLGGVAKPATGPIVPGSPFYEPAVDLYTLDIAKADALLDEAGLKK HHHHHHHCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCC GPDGTRFPLTIDYIPNDNDQQRNVAEYLRAGLKRIGIALQVRAAPDFPTWAQRVSNFDFD CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHCCCCCE LTMDNVFNWGDPVIGVARTYLSTNIRKGVIWSNTQQYKNPKVDELLNAAAVETDLEKRKA EEHHCCCCCCCCHHHHHHHHHHHCCCCCEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHH LYSEFQKIVVSEAPIAYINLTPYKAVYDKRLTNLPLSIWGPLSPLDEVAWAQGAAGAER HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1339409; 7542800; 2041470 [H]