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The map label for this gene is yhjC [C]

Identifier: 170751133

GI number: 170751133

Start: 5057523

End: 5058416

Strand: Direct

Name: yhjC [C]

Synonym: Mrad2831_4749

Alternate gene names: 170751133

Gene position: 5057523-5058416 (Clockwise)

Preceding gene: 170751131

Following gene: 170751134

Centisome position: 83.21

GC content: 69.13

Gene sequence:

>894_bases
ATGAGCGACCGTTGGCAGGAAATGGCCGTGTTCGTCCGCGTGGCGGAGACCGGCAGCCTTTCGCGCGCGGGACGCGAACT
GATGCTCTCGCAACCTTCCGTGTCGCGCATCGTCGGCGCGCTTGAGGCACGGCTGGGCACGACGCTGCTGCTGCGCACCA
CCCGTAGCATCTCCCTGACGGAAGCCGGCAGCCTGTACCTGGAACGCGCGCGATCCCTCCTCGCGGAGGTTGAGGAGGCC
GAGCAGGCGGCCCGGGGAGTGGACTCGCTCCAGGGCGCGATCCGTCTGGCGATGCCAGTGCTCTACGGCTCCCGGGCCGT
CGTCCCCGCGCTCGCGACGTTCCTGGCCCGGCATCCGGGCCTCCGGATCGAGATCACCATGAGCGACGCGCGCCAAAACC
TCGTAATGGACGGGGTCGACATCGCCATCCGCCTCGGCGTCGGCCCGTTGGCAGACTCAACCTTCGGGGCCCGCAGGCTT
GCGACGGTCGAACGCTTGGTGGTCGCGTCGCCGGCCTATCTCTCATCCCGCGGCACACCCGTTATCCCGGCCGAACTCGC
TCGGCACGATTGCATCGTGCAGCACGGCCTGTTCGGTCGCGAGAGCTGGCGCTTCACGCGCGACGGGACCGTCACCACCG
TCGATGTCCCCGCGCGCCTCTGGATCAACTCGGCGCCGGGGATCCTGGCCGCTGCGGTGGCCGGCATGGGCATCGCGCTG
GCGACCCGCGTCATGGCCGGGGATGAGCTGCGTGCCGGCCAGCTCGTCCAGGTGCTTGAGCCCTATCGGCTCGATCCTGC
CGAGGTCTACGCGGTCTTCCCGGCGGGTCCGAGACCGTCTGCGAAGGTGAGAGCGATCATGGATCACCTTGGCGCGTCGC
TTAACCAGGGTTGA

Upstream 100 bases:

>100_bases
GATGCTCGGGCGGCCGCGACGGCGCCCCGCAGGGGGAGATAGCCTATCCACCCCATTCGATGTATCCGTTCGCCCCGGAG
ATCATCTATTCGGAATGCGA

Downstream 100 bases:

>100_bases
TCAAACATTCTTTGGCCCCGACCAGTGGCGCAAGAGGCGTATCGATACCGGAGCAGCGGTGGTGTGTAGGTCCGCTTTTC
CGGCGAGGCTGCTCCGAAGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSDRWQEMAVFVRVAETGSLSRAGRELMLSQPSVSRIVGALEARLGTTLLLRTTRSISLTEAGSLYLERARSLLAEVEEA
EQAARGVDSLQGAIRLAMPVLYGSRAVVPALATFLARHPGLRIEITMSDARQNLVMDGVDIAIRLGVGPLADSTFGARRL
ATVERLVVASPAYLSSRGTPVIPAELARHDCIVQHGLFGRESWRFTRDGTVTTVDVPARLWINSAPGILAAAVAGMGIAL
ATRVMAGDELRAGQLVQVLEPYRLDPAEVYAVFPAGPRPSAKVRAIMDHLGASLNQG

Sequences:

>Translated_297_residues
MSDRWQEMAVFVRVAETGSLSRAGRELMLSQPSVSRIVGALEARLGTTLLLRTTRSISLTEAGSLYLERARSLLAEVEEA
EQAARGVDSLQGAIRLAMPVLYGSRAVVPALATFLARHPGLRIEITMSDARQNLVMDGVDIAIRLGVGPLADSTFGARRL
ATVERLVVASPAYLSSRGTPVIPAELARHDCIVQHGLFGRESWRFTRDGTVTTVDVPARLWINSAPGILAAAVAGMGIAL
ATRVMAGDELRAGQLVQVLEPYRLDPAEVYAVFPAGPRPSAKVRAIMDHLGASLNQG
>Mature_296_residues
SDRWQEMAVFVRVAETGSLSRAGRELMLSQPSVSRIVGALEARLGTTLLLRTTRSISLTEAGSLYLERARSLLAEVEEAE
QAARGVDSLQGAIRLAMPVLYGSRAVVPALATFLARHPGLRIEITMSDARQNLVMDGVDIAIRLGVGPLADSTFGARRLA
TVERLVVASPAYLSSRGTPVIPAELARHDCIVQHGLFGRESWRFTRDGTVTTVDVPARLWINSAPGILAAAVAGMGIALA
TRVMAGDELRAGQLVQVLEPYRLDPAEVYAVFPAGPRPSAKVRAIMDHLGASLNQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=32.8859060402685, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=30.3448275862069, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=34.2465753424658, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1789440, Length=312, Percent_Identity=29.4871794871795, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1787589, Length=273, Percent_Identity=29.3040293040293, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=30.5841924398625, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1789173, Length=251, Percent_Identity=30.6772908366534, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=28.4246575342466, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786713, Length=275, Percent_Identity=28, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788297, Length=258, Percent_Identity=25.5813953488372, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI157672245, Length=142, Percent_Identity=32.3943661971831, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788481, Length=259, Percent_Identity=27.7992277992278, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788706, Length=289, Percent_Identity=23.5294117647059, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=24.6575342465753, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=186, Percent_Identity=27.9569892473118, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788748, Length=158, Percent_Identity=33.5443037974684, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787806, Length=248, Percent_Identity=28.2258064516129, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31785; Mature: 31654

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRWQEMAVFVRVAETGSLSRAGRELMLSQPSVSRIVGALEARLGTTLLLRTTRSISLT
CCCHHHHHHHHHEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCEEEC
EAGSLYLERARSLLAEVEEAEQAARGVDSLQGAIRLAMPVLYGSRAVVPALATFLARHPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
LRIEITMSDARQNLVMDGVDIAIRLGVGPLADSTFGARRLATVERLVVASPAYLSSRGTP
CEEEEEECCCCCHHEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCC
VIPAELARHDCIVQHGLFGRESWRFTRDGTVTTVDVPARLWINSAPGILAAAVAGMGIAL
CCHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHH
ATRVMAGDELRAGQLVQVLEPYRLDPAEVYAVFPAGPRPSAKVRAIMDHLGASLNQG
HHHHHCCCCCCHHHHHHHHCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDRWQEMAVFVRVAETGSLSRAGRELMLSQPSVSRIVGALEARLGTTLLLRTTRSISLT
CCHHHHHHHHHEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCEEEC
EAGSLYLERARSLLAEVEEAEQAARGVDSLQGAIRLAMPVLYGSRAVVPALATFLARHPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
LRIEITMSDARQNLVMDGVDIAIRLGVGPLADSTFGARRLATVERLVVASPAYLSSRGTP
CEEEEEECCCCCHHEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCC
VIPAELARHDCIVQHGLFGRESWRFTRDGTVTTVDVPARLWINSAPGILAAAVAGMGIAL
CCHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHH
ATRVMAGDELRAGQLVQVLEPYRLDPAEVYAVFPAGPRPSAKVRAIMDHLGASLNQG
HHHHHCCCCCCHHHHHHHHCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]