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The map label for this gene is ykgD [C]

Identifier: 170751093

GI number: 170751093

Start: 5010484

End: 5011467

Strand: Direct

Name: ykgD [C]

Synonym: Mrad2831_4709

Alternate gene names: 170751093

Gene position: 5010484-5011467 (Clockwise)

Preceding gene: 170751087

Following gene: 170751098

Centisome position: 82.44

GC content: 65.24

Gene sequence:

>984_bases
GTGTTGTGTCCGATCGTCCGGGACCTTATCGTCGCCCTGATGGATGTCCTCGCCGAAGTACTCGACCGCGTGCGCCTGGG
TGGGACGCTGCTGTTCCATTTCGAGCTCGGCCATCCCTGGAACCTGGCCCTCCCGCAACGCCCGTACGCGCTGTTCCATT
ACGTCAGCCATGGCTCGGCGACGCTCGCGCTCGATCAGGAGCGCGAATTCCACATGAGCGCGGGCGACCTCGTTGTTATC
TCGCGCGGCGAGCCCCACGAGTTCTACTCGGATCGCCGAGCAGAGCCGTTCTCGGTCATCGATCTCGATCGGTCGTCCGC
GCATCACGGCATAGTCCGCCATGGCGGCAGCGCCCCGCCCTGCTCCACGATGATTTGCGGCAAGTTCACCGTGGCACAGC
CATCGCGGAGCAGCCTGTTGGAGCTGCTTCCGCCCGTCCTCCACCTGAAATCGACGGAGGACGGTGCGTGGCTCGAGCTG
ATCCTGCGGCGCATGGTGCACGAGTCGGCGCAGCCGCGCCCCGGCCAGGACGTGGTCCTTTCACGATTGACGGAGGTCCT
CTTCGTCGAGGTGCTGCGAAGCTGGTTGACATCGCTGCGTCCCGGCGAAGGTGGCTGGCTGGGGGCGATCACGGATCCGC
ATATCGGACCGGCGCTCCGATTGATCCACAAGCGCTTGGATCGGTCCTGGACACTGGACGAGCTGGGGCAGCAGGTCGGG
CTCGGTCGCTCGGCGTTCTCGGCTCGCTTTACCAAGCTCGTCGGCCAGTCGATGTACCGCTACCTGATCGCGCGCCGGAT
GTCGGAGGCCGCTTTCCTGCTCGAGACGAGTGACCAGGGGATTGCACGTATTGCGACCGGCGTCGGCTACGAGTCCGTCG
CCGCGTTCTCAAAGCTTTTTCACCGGCATCATGGTCTGTCGCCCGGCCGTTACAGAGCGACCCGCCACCTCAGAGGGGAC
GCGCAGCAGGAGAGCGGCCTGTAA

Upstream 100 bases:

>100_bases
GAACCTTGCGTAAGGGACGATGGACGATGGCACGATGCGTCAACGCCCTCGGCACGACCTAGTATGACTGTACCTTGAAC
GGTAGAGCTTGATCGTCCGC

Downstream 100 bases:

>100_bases
CGCTGGTCTTTCGATCGGCCGAAGTCCGGGCCATGCGGAGCGGGCCGGTCCCATATCGGCGGCGCTTCCCCGGAGCGGTG
GAGCGCCCGGCGTGACGAGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MLCPIVRDLIVALMDVLAEVLDRVRLGGTLLFHFELGHPWNLALPQRPYALFHYVSHGSATLALDQEREFHMSAGDLVVI
SRGEPHEFYSDRRAEPFSVIDLDRSSAHHGIVRHGGSAPPCSTMICGKFTVAQPSRSSLLELLPPVLHLKSTEDGAWLEL
ILRRMVHESAQPRPGQDVVLSRLTEVLFVEVLRSWLTSLRPGEGGWLGAITDPHIGPALRLIHKRLDRSWTLDELGQQVG
LGRSAFSARFTKLVGQSMYRYLIARRMSEAAFLLETSDQGIARIATGVGYESVAAFSKLFHRHHGLSPGRYRATRHLRGD
AQQESGL

Sequences:

>Translated_327_residues
MLCPIVRDLIVALMDVLAEVLDRVRLGGTLLFHFELGHPWNLALPQRPYALFHYVSHGSATLALDQEREFHMSAGDLVVI
SRGEPHEFYSDRRAEPFSVIDLDRSSAHHGIVRHGGSAPPCSTMICGKFTVAQPSRSSLLELLPPVLHLKSTEDGAWLEL
ILRRMVHESAQPRPGQDVVLSRLTEVLFVEVLRSWLTSLRPGEGGWLGAITDPHIGPALRLIHKRLDRSWTLDELGQQVG
LGRSAFSARFTKLVGQSMYRYLIARRMSEAAFLLETSDQGIARIATGVGYESVAAFSKLFHRHHGLSPGRYRATRHLRGD
AQQESGL
>Mature_327_residues
MLCPIVRDLIVALMDVLAEVLDRVRLGGTLLFHFELGHPWNLALPQRPYALFHYVSHGSATLALDQEREFHMSAGDLVVI
SRGEPHEFYSDRRAEPFSVIDLDRSSAHHGIVRHGGSAPPCSTMICGKFTVAQPSRSSLLELLPPVLHLKSTEDGAWLEL
ILRRMVHESAQPRPGQDVVLSRLTEVLFVEVLRSWLTSLRPGEGGWLGAITDPHIGPALRLIHKRLDRSWTLDELGQQVG
LGRSAFSARFTKLVGQSMYRYLIARRMSEAAFLLETSDQGIARIATGVGYESVAAFSKLFHRHHGLSPGRYRATRHLRGD
AQQESGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=304, Percent_Identity=24.6710526315789, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36456; Mature: 36456

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCPIVRDLIVALMDVLAEVLDRVRLGGTLLFHFELGHPWNLALPQRPYALFHYVSHGSA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCE
TLALDQEREFHMSAGDLVVISRGEPHEFYSDRRAEPFSVIDLDRSSAHHGIVRHGGSAPP
EEEECCCHHHCCCCCCEEEEECCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHCCCCCCC
CSTMICGKFTVAQPSRSSLLELLPPVLHLKSTEDGAWLELILRRMVHESAQPRPGQDVVL
CCCEEECCEEECCCCHHHHHHHCCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
SRLTEVLFVEVLRSWLTSLRPGEGGWLGAITDPHIGPALRLIHKRLDRSWTLDELGQQVG
HHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHC
LGRSAFSARFTKLVGQSMYRYLIARRMSEAAFLLETSDQGIARIATGVGYESVAAFSKLF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHCCCHHHHHHHHHHH
HRHHGLSPGRYRATRHLRGDAQQESGL
HHHCCCCCCHHHHHHHHCCCCHHHCCC
>Mature Secondary Structure
MLCPIVRDLIVALMDVLAEVLDRVRLGGTLLFHFELGHPWNLALPQRPYALFHYVSHGSA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCE
TLALDQEREFHMSAGDLVVISRGEPHEFYSDRRAEPFSVIDLDRSSAHHGIVRHGGSAPP
EEEECCCHHHCCCCCCEEEEECCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHCCCCCCC
CSTMICGKFTVAQPSRSSLLELLPPVLHLKSTEDGAWLELILRRMVHESAQPRPGQDVVL
CCCEEECCEEECCCCHHHHHHHCCHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
SRLTEVLFVEVLRSWLTSLRPGEGGWLGAITDPHIGPALRLIHKRLDRSWTLDELGQQVG
HHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHC
LGRSAFSARFTKLVGQSMYRYLIARRMSEAAFLLETSDQGIARIATGVGYESVAAFSKLF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHCCCHHHHHHHHHHH
HRHHGLSPGRYRATRHLRGDAQQESGL
HHHCCCCCCHHHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]