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The map label for this gene is rssA [H]

Identifier: 170751026

GI number: 170751026

Start: 4934047

End: 4935030

Strand: Reverse

Name: rssA [H]

Synonym: Mrad2831_4637

Alternate gene names: 170751026

Gene position: 4935030-4934047 (Counterclockwise)

Preceding gene: 170751027

Following gene: 170751025

Centisome position: 81.2

GC content: 77.64

Gene sequence:

>984_bases
ATGAGCCGCCCTCTTGCCACCCGGTGGCAAGACGAGTCCGCCGACCCGCATTTCCCGCCCGGAACCGTCGAGCCGCTCCG
GCCGCCGCCGAGCCCCGGTCCGCTCGTCGGGCTCGCCCTCGGGGGCGGCTCGGCCCGGGGCTGGGCGCATATCGGGGTGA
TCCGCGCCCTGGAGGAGGCCGGCATCCACCCGTCCGTGGTGGCGGGCTGCTCCATCGGCGCCGTGGTCGGCGCCTGCTAC
GCGGCCGGGCGCCTCGACCGGCTCGAGGCCTTCGCCCGGGCGCTGACCCGGCGCCGGGTCGTCGGGCTCATCGATCCCCG
CCTGCCGGGCTCCGGGCTGATCGCCGGCAACCGCCTCCGCCAGCGCCTCGCCGCCGATCTCGGCGAGCGCCGGATCGAGA
CGCTGCCGGTCCGCTTCGGCTGCGTCGCCACCGAGTACGGCACCGGCCACGAGGTCAGCCTGACCGCGGGCCCGGCGGTG
GACGCGGTGCGCGCCTCCTACGCGATCCCCGGCCTGTTCCCGCCGGTGGCCCATGACGGCCGCGTGCTGATGGACGGGAC
CCTGGTCAACCCGGTGCCGGTGGCGCTCGCCCGCGCGCTCGGGGCCGACTTGGTCATCTGCGTGAACCTCAACGGCGACA
CCGGCGGACCGGTGGTGCGCGAGGCACCGCACCCGCCCCCGCGCCGGGGCTTCCTGCAGGGGGTGCGCGGGCGCCTGCCG
GGCTTCGACCGGCCGGAGCCCGAGATCGCCGTGCCGGGCATCGCCCGGGTGGTGCTCGACGCCTTCAACACCACGCAGGA
CCGGATCTCGCGGGCGCGGCTGGAGCGCGACCCGCCGGACGTGGCCATCGGCCCGGATCTCGCCGCCTTCGGGCTGTTCG
ACTTCCACCGGGCCGCGGAGGGCATCGCCCTCGGGCACCGCGCCGCCCGCGCCGCCCTGCCCCGGATCCGGGCCGTGCTG
GAGGGTGCGGCCGCGCGGGCCTGA

Upstream 100 bases:

>100_bases
GCGGCGACGGCGGCTGCTGCCACACCGGCCGGCGCGACTGCTTCTACCGCAGCGTCGTCCGGGAGGCGGACGGCCGGGTG
GTCCTGAAAGCCGCCGGGCG

Downstream 100 bases:

>100_bases
AAGGTCCGGGCGCGCCCCTTCGGAGGAGGCCGTCATCCGGCTGTCGTGGCCGCCTGCGATGGGCGCCGTGCATGCTGGAG
GACCTCCAATGTATACGAGT

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MSRPLATRWQDESADPHFPPGTVEPLRPPPSPGPLVGLALGGGSARGWAHIGVIRALEEAGIHPSVVAGCSIGAVVGACY
AAGRLDRLEAFARALTRRRVVGLIDPRLPGSGLIAGNRLRQRLAADLGERRIETLPVRFGCVATEYGTGHEVSLTAGPAV
DAVRASYAIPGLFPPVAHDGRVLMDGTLVNPVPVALARALGADLVICVNLNGDTGGPVVREAPHPPPRRGFLQGVRGRLP
GFDRPEPEIAVPGIARVVLDAFNTTQDRISRARLERDPPDVAIGPDLAAFGLFDFHRAAEGIALGHRAARAALPRIRAVL
EGAAARA

Sequences:

>Translated_327_residues
MSRPLATRWQDESADPHFPPGTVEPLRPPPSPGPLVGLALGGGSARGWAHIGVIRALEEAGIHPSVVAGCSIGAVVGACY
AAGRLDRLEAFARALTRRRVVGLIDPRLPGSGLIAGNRLRQRLAADLGERRIETLPVRFGCVATEYGTGHEVSLTAGPAV
DAVRASYAIPGLFPPVAHDGRVLMDGTLVNPVPVALARALGADLVICVNLNGDTGGPVVREAPHPPPRRGFLQGVRGRLP
GFDRPEPEIAVPGIARVVLDAFNTTQDRISRARLERDPPDVAIGPDLAAFGLFDFHRAAEGIALGHRAARAALPRIRAVL
EGAAARA
>Mature_326_residues
SRPLATRWQDESADPHFPPGTVEPLRPPPSPGPLVGLALGGGSARGWAHIGVIRALEEAGIHPSVVAGCSIGAVVGACYA
AGRLDRLEAFARALTRRRVVGLIDPRLPGSGLIAGNRLRQRLAADLGERRIETLPVRFGCVATEYGTGHEVSLTAGPAVD
AVRASYAIPGLFPPVAHDGRVLMDGTLVNPVPVALARALGADLVICVNLNGDTGGPVVREAPHPPPRRGFLQGVRGRLPG
FDRPEPEIAVPGIARVVLDAFNTTQDRISRARLERDPPDVAIGPDLAAFGLFDFHRAAEGIALGHRAARAALPRIRAVLE
GAAARA

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=185, Percent_Identity=33.5135135135135, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI116256487, Length=185, Percent_Identity=33.5135135135135, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI260656043, Length=185, Percent_Identity=33.5135135135135, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI260656037, Length=185, Percent_Identity=33.5135135135135, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI260656039, Length=185, Percent_Identity=33.5135135135135, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI148727335, Length=185, Percent_Identity=33.5135135135135, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI148727290, Length=185, Percent_Identity=33.5135135135135, Blast_Score=95, Evalue=1e-19,
Organism=Escherichia coli, GI226510936, Length=289, Percent_Identity=38.4083044982699, Blast_Score=190, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI193204778, Length=164, Percent_Identity=30.4878048780488, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71997299, Length=167, Percent_Identity=31.7365269461078, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71997289, Length=167, Percent_Identity=31.7365269461078, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323581, Length=186, Percent_Identity=32.7956989247312, Blast_Score=102, Evalue=7e-23,
Organism=Drosophila melanogaster, GI281376913, Length=184, Percent_Identity=33.1521739130435, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28571388, Length=184, Percent_Identity=32.0652173913043, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 34238; Mature: 34107

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPLATRWQDESADPHFPPGTVEPLRPPPSPGPLVGLALGGGSARGWAHIGVIRALEEA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC
GIHPSVVAGCSIGAVVGACYAAGRLDRLEAFARALTRRRVVGLIDPRLPGSGLIAGNRLR
CCCCHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEHHHHH
QRLAADLGERRIETLPVRFGCVATEYGTGHEVSLTAGPAVDAVRASYAIPGLFPPVAHDG
HHHHHHHHHHHHHHCCEEECEEEECCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCC
RVLMDGTLVNPVPVALARALGADLVICVNLNGDTGGPVVREAPHPPPRRGFLQGVRGRLP
EEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
GFDRPEPEIAVPGIARVVLDAFNTTQDRISRARLERDPPDVAIGPDLAAFGLFDFHRAAE
CCCCCCCCEECCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHH
GIALGHRAARAALPRIRAVLEGAAARA
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRPLATRWQDESADPHFPPGTVEPLRPPPSPGPLVGLALGGGSARGWAHIGVIRALEEA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC
GIHPSVVAGCSIGAVVGACYAAGRLDRLEAFARALTRRRVVGLIDPRLPGSGLIAGNRLR
CCCCHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEHHHHH
QRLAADLGERRIETLPVRFGCVATEYGTGHEVSLTAGPAVDAVRASYAIPGLFPPVAHDG
HHHHHHHHHHHHHHCCEEECEEEECCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCC
RVLMDGTLVNPVPVALARALGADLVICVNLNGDTGGPVVREAPHPPPRRGFLQGVRGRLP
EEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
GFDRPEPEIAVPGIARVVLDAFNTTQDRISRARLERDPPDVAIGPDLAAFGLFDFHRAAE
CCCCCCCCEECCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHH
GIALGHRAARAALPRIRAVLEGAAARA
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]