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The map label for this gene is sodB [H]

Identifier: 170750886

GI number: 170750886

Start: 4778800

End: 4779399

Strand: Direct

Name: sodB [H]

Synonym: Mrad2831_4497

Alternate gene names: 170750886

Gene position: 4778800-4779399 (Clockwise)

Preceding gene: 170750884

Following gene: 170750887

Centisome position: 78.63

GC content: 63.67

Gene sequence:

>600_bases
ATGACCTTCACCCTGCCGGAACTGCCCTACGCCTACGACGCGCTGGGGCCGTACATGTCGAAGGAGACCCTCGAGTTCCA
CCACGACAAGCACCACAAGGCCTATGTCGACACGGGCAACAAGCTGCTTGAGGGCACGGATCTCCAGGGCAAGAGCGTCG
AGGAGATCGTCAAGGCCGCCTACAACACGAATCAGCCGCTCTTCAACAACGCCGGCCAGCACTACAACCACATCCACTTC
TGGCAGTGGATGAAGCCGAACGGCGGCGGCGCGATCCCCGGCGCCCTCGCCAAGAAGATCGACGAGGATCTCGGCGGCGC
CGAGAAATTCAAGGCGGACTTCATCCAGGCGGGCGTCGGCCAGTTCGGCTCGGGCTGGGCGTGGCTCGCCGTCAAGGACG
GCAAGCTCGCGATCATGAAGACCCCGAACGGCGAGAACCCGCTGGTCCACGGCGCTCAGCCGATCCTCGGCGTCGACGTG
TGGGAGCACTCCTACTACATCGACTACCGCAACCGCCGGCCCGACTACCTGAAGGCGTTCATCGAGAACCTCGTGAACTG
GGAGCACGTGGAGAAGATGTACGCCGAGGCGACCCGCTGA

Upstream 100 bases:

>100_bases
GGCGTTGCCGTCCCGCGGCCACCGACTTACCTAGCGGGCTCTCGACTCGGGAGCCCCCGCCGGGGACGAGGCCGCCCCCT
GCTAAGCGGAGATAGACGCG

Downstream 100 bases:

>100_bases
GGCGTATCGCCGGTGCCGCGGTCCCTGTGTCCGCGGCACCCTTGAGGTGGCGCACGAAACCGGCTCTTGATGCGCCCGAC
GCCGGATGACCCGGTGCGGA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MTFTLPELPYAYDALGPYMSKETLEFHHDKHHKAYVDTGNKLLEGTDLQGKSVEEIVKAAYNTNQPLFNNAGQHYNHIHF
WQWMKPNGGGAIPGALAKKIDEDLGGAEKFKADFIQAGVGQFGSGWAWLAVKDGKLAIMKTPNGENPLVHGAQPILGVDV
WEHSYYIDYRNRRPDYLKAFIENLVNWEHVEKMYAEATR

Sequences:

>Translated_199_residues
MTFTLPELPYAYDALGPYMSKETLEFHHDKHHKAYVDTGNKLLEGTDLQGKSVEEIVKAAYNTNQPLFNNAGQHYNHIHF
WQWMKPNGGGAIPGALAKKIDEDLGGAEKFKADFIQAGVGQFGSGWAWLAVKDGKLAIMKTPNGENPLVHGAQPILGVDV
WEHSYYIDYRNRRPDYLKAFIENLVNWEHVEKMYAEATR
>Mature_198_residues
TFTLPELPYAYDALGPYMSKETLEFHHDKHHKAYVDTGNKLLEGTDLQGKSVEEIVKAAYNTNQPLFNNAGQHYNHIHFW
QWMKPNGGGAIPGALAKKIDEDLGGAEKFKADFIQAGVGQFGSGWAWLAVKDGKLAIMKTPNGENPLVHGAQPILGVDVW
EHSYYIDYRNRRPDYLKAFIENLVNWEHVEKMYAEATR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=43, Blast_Score=150, Evalue=6e-37,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=43, Blast_Score=150, Evalue=6e-37,
Organism=Homo sapiens, GI67782309, Length=200, Percent_Identity=36.5, Blast_Score=115, Evalue=2e-26,
Organism=Escherichia coli, GI1787946, Length=196, Percent_Identity=50.5102040816327, Blast_Score=197, Evalue=4e-52,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=44.6601941747573, Blast_Score=177, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI17506561, Length=200, Percent_Identity=37, Blast_Score=123, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=35.0253807106599, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=36.4077669902913, Blast_Score=108, Evalue=6e-25,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=38.5, Blast_Score=130, Evalue=6e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22534; Mature: 22402

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFTLPELPYAYDALGPYMSKETLEFHHDKHHKAYVDTGNKLLEGTDLQGKSVEEIVKAA
CCCCCCCCCCHHHHHCCHHCHHHHHHHCCCCCEEEECCCCEEECCCCCCCCCHHHHHHHH
YNTNQPLFNNAGQHYNHIHFWQWMKPNGGGAIPGALAKKIDEDLGGAEKFKADFIQAGVG
HCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC
QFGSGWAWLAVKDGKLAIMKTPNGENPLVHGAQPILGVDVWEHSYYIDYRNRRPDYLKAF
CCCCCEEEEEEECCCEEEEECCCCCCCEEECCCCEEEEEEECCEEEEECCCCCHHHHHHH
IENLVNWEHVEKMYAEATR
HHHHHCHHHHHHHHHHCCC
>Mature Secondary Structure 
TFTLPELPYAYDALGPYMSKETLEFHHDKHHKAYVDTGNKLLEGTDLQGKSVEEIVKAA
CCCCCCCCCHHHHHCCHHCHHHHHHHCCCCCEEEECCCCEEECCCCCCCCCHHHHHHHH
YNTNQPLFNNAGQHYNHIHFWQWMKPNGGGAIPGALAKKIDEDLGGAEKFKADFIQAGVG
HCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC
QFGSGWAWLAVKDGKLAIMKTPNGENPLVHGAQPILGVDVWEHSYYIDYRNRRPDYLKAF
CCCCCEEEEEEECCCEEEEECCCCCCCEEECCCCEEEEEEECCEEEEECCCCCHHHHHHH
IENLVNWEHVEKMYAEATR
HHHHHCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10419947; 11481430 [H]