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The map label for this gene is amiR [H]

Identifier: 170750809

GI number: 170750809

Start: 4698020

End: 4698646

Strand: Direct

Name: amiR [H]

Synonym: Mrad2831_4420

Alternate gene names: 170750809

Gene position: 4698020-4698646 (Clockwise)

Preceding gene: 170750808

Following gene: 170750810

Centisome position: 77.3

GC content: 71.93

Gene sequence:

>627_bases
GTGACCGCCCCTGCCCGCAAGATCCTGGACGACCTGCGGCGCGCCCGCGCCCTCGTCATCCATCCCCGGGACGAGGAGGC
CGACGCGCTGCTGGAGCAGCTCCGCCGCCTCGGCTGCGCGGTTTCCCTGGCGTGGCCGCCGCCCGCCGCCCTGCCGGCCG
ACATCGACACGCTGTTCATCCAGCTCGACGACGCCCAGGTGATGCACCTGCTGCCGTCGATCGAGGCGATCGAGCCGGCG
GTCATCGCCATCGTGGCCTACGAGAGCCCGACCTCGCTGAAGGCGATCGCCGACGTCAACGCCCACGGCGTGCTCAACAA
GCCGCTCCACCCGCGGGGCGTGCTGACCCAGTTCGCCCTGGCCCGCTACCGGCGCGGCTACGAGGGGCGGCTCACCAGCA
AGATCAACCGGCTGGAGGAGACCATGAAGGGCCGCCGCACCGTCGAGAAGGCGGTCCGGCTGCTCGTCGACCTGAACCGG
ATCGACGAGGACGCCGCCTACAAGATGCTCCGGGACCGGGCCACCGCCGCCCGCGTGCCGATGGCGAGCGTGGCCGAGAG
CGTGGTCACGGCGCACGAGGCGATGAGCGGCCTCGGCCTGCGCATCGCGTTGGCGGAAAAGACCTGA

Upstream 100 bases:

>100_bases
AGTTCGACGTGGTCTGGCGGGCGCGGCGGCCGGTGCGGCCCGACCCGTACCTCGCGTGGTCCCGGTTCGAGACGAACTGG
CTGGAGGAGGGGCTCGCCGC

Downstream 100 bases:

>100_bases
TCGCAGCAGCTTGCTGCATTTATGGTCTTGCGGTCTGTTTCGGGGTGCGTATCGTAGTCTAACCGGGCAAGGTTGCCCCG
CAGCAGCAGTGCTGCATGAC

Product: response regulator receiver/ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MTAPARKILDDLRRARALVIHPRDEEADALLEQLRRLGCAVSLAWPPPAALPADIDTLFIQLDDAQVMHLLPSIEAIEPA
VIAIVAYESPTSLKAIADVNAHGVLNKPLHPRGVLTQFALARYRRGYEGRLTSKINRLEETMKGRRTVEKAVRLLVDLNR
IDEDAAYKMLRDRATAARVPMASVAESVVTAHEAMSGLGLRIALAEKT

Sequences:

>Translated_208_residues
MTAPARKILDDLRRARALVIHPRDEEADALLEQLRRLGCAVSLAWPPPAALPADIDTLFIQLDDAQVMHLLPSIEAIEPA
VIAIVAYESPTSLKAIADVNAHGVLNKPLHPRGVLTQFALARYRRGYEGRLTSKINRLEETMKGRRTVEKAVRLLVDLNR
IDEDAAYKMLRDRATAARVPMASVAESVVTAHEAMSGLGLRIALAEKT
>Mature_207_residues
TAPARKILDDLRRARALVIHPRDEEADALLEQLRRLGCAVSLAWPPPAALPADIDTLFIQLDDAQVMHLLPSIEAIEPAV
IAIVAYESPTSLKAIADVNAHGVLNKPLHPRGVLTQFALARYRRGYEGRLTSKINRLEETMKGRRTVEKAVRLLVDLNRI
DEDAAYKMLRDRATAARVPMASVAESVVTAHEAMSGLGLRIALAEKT

Specific function: Positive controlling element of AmiE, the gene for aliphatic amidase. Acts as a transcriptional antitermination factor. It is thought to allow RNA polymerase read through a rho- independent transcription terminator between the AmiE promoter and gene [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ANTAR domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR [H]

EC number: NA

Molecular weight: Translated: 22881; Mature: 22750

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS50921 ANTAR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPARKILDDLRRARALVIHPRDEEADALLEQLRRLGCAVSLAWPPPAALPADIDTLFI
CCCCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEE
QLDDAQVMHLLPSIEAIEPAVIAIVAYESPTSLKAIADVNAHGVLNKPLHPRGVLTQFAL
EECCHHHHHHHCCHHHCCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHH
ARYRRGYEGRLTSKINRLEETMKGRRTVEKAVRLLVDLNRIDEDAAYKMLRDRATAARVP
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
MASVAESVVTAHEAMSGLGLRIALAEKT
HHHHHHHHHHHHHHHHCCCEEEEEECCC
>Mature Secondary Structure 
TAPARKILDDLRRARALVIHPRDEEADALLEQLRRLGCAVSLAWPPPAALPADIDTLFI
CCCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEE
QLDDAQVMHLLPSIEAIEPAVIAIVAYESPTSLKAIADVNAHGVLNKPLHPRGVLTQFAL
EECCHHHHHHHCCHHHCCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHH
ARYRRGYEGRLTSKINRLEETMKGRRTVEKAVRLLVDLNRIDEDAAYKMLRDRATAARVP
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
MASVAESVVTAHEAMSGLGLRIALAEKT
HHHHHHHHHHHHHHHHCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2495988; 10984043; 7539417; 10508151 [H]