Click here to switch to the map view.

The map label for this gene is yodB [C]

Identifier: 170750798

GI number: 170750798

Start: 4677619

End: 4678221

Strand: Reverse

Name: yodB [C]

Synonym: Mrad2831_4409

Alternate gene names: 170750798

Gene position: 4678221-4677619 (Counterclockwise)

Preceding gene: 170750799

Following gene: 170750797

Centisome position: 76.97

GC content: 71.81

Gene sequence:

>603_bases
GTGACGGAGACCGCCCGCTTCAACCGGCCCGCGCGCCTGCTCCACTGGACCATGGCGGCGCTGATCCTGGCGATGCTGCT
CACCGGCGCCGCCATGGTGACCTCGCTCGCCGATTACAGCACCCTCGTGGCCCTGCACCGGCCGCTCGGGATCCTGATCC
TGCTGCTCGCCGGGCTTCGACTGGCGAATCGCTGGCGCCACGCGCCGCCGCCGCTGCCGGCGAATCTTCCGGTCTGGCAG
AGGCGCGCGGCCCACGGCTCGCACATCCTCCTCTACGGCCTCATGCTGGCCATGCCGCTGATCGGCTGGGCGATGCTGTC
GGCGGCGCGCTATCCCGTGATCCTCGCCGGCCCGGTGGTCCTGCCGCCGATCCTGCCGCAGGACCCGATGCTGTACGCGG
CCCTGCGCCGGCTCCACACCGTGCTGGCCTACGGGCTGTTCGCCGTGATCCTCGCGCATCTGGCGGCGGCGCTGCTGCAC
GCGCTGATCCGCCGGGACGGGGTCTTCGCCAGCATGGCGCCCTGGCGGTCGAGGCCGGCCGGGACGGCCGCGCCCCCGAA
ACGGCGCTCTCGTTCTCTTGAAAGTCTGATCCGTTCTCCATAA

Upstream 100 bases:

>100_bases
GCGCCCGGTCGGCGGCCTACGCGCAATCCGTCACCCGCCGCGCCGGCGAGACCAAGACGCCGAGCGCCGTGACCGGGGCC
GCCATCCACGGAGCCGCCCT

Downstream 100 bases:

>100_bases
AGAACGCACGCCCCGGTCGGACGGGGCGGGCGATCTCTGCGTGGAGGACGAGGCGATGTCAGAGGGATTAGCGGCGCGTA
CCGTCGCGGCGGCCAACGGC

Product: cytochrome B561

Products: NA

Alternate protein names: Cytochrome; Type-B Cytochrome; Cytochrome B-Like Protein; Cytochrome B/B6 Domain; Nickel-Dependent Hydrogenase

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MTETARFNRPARLLHWTMAALILAMLLTGAAMVTSLADYSTLVALHRPLGILILLLAGLRLANRWRHAPPPLPANLPVWQ
RRAAHGSHILLYGLMLAMPLIGWAMLSAARYPVILAGPVVLPPILPQDPMLYAALRRLHTVLAYGLFAVILAHLAAALLH
ALIRRDGVFASMAPWRSRPAGTAAPPKRRSRSLESLIRSP

Sequences:

>Translated_200_residues
MTETARFNRPARLLHWTMAALILAMLLTGAAMVTSLADYSTLVALHRPLGILILLLAGLRLANRWRHAPPPLPANLPVWQ
RRAAHGSHILLYGLMLAMPLIGWAMLSAARYPVILAGPVVLPPILPQDPMLYAALRRLHTVLAYGLFAVILAHLAAALLH
ALIRRDGVFASMAPWRSRPAGTAAPPKRRSRSLESLIRSP
>Mature_199_residues
TETARFNRPARLLHWTMAALILAMLLTGAAMVTSLADYSTLVALHRPLGILILLLAGLRLANRWRHAPPPLPANLPVWQR
RAAHGSHILLYGLMLAMPLIGWAMLSAARYPVILAGPVVLPPILPQDPMLYAALRRLHTVLAYGLFAVILAHLAAALLHA
LIRRDGVFASMAPWRSRPAGTAAPPKRRSRSLESLIRSP

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082013, Length=178, Percent_Identity=29.7752808988764, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21888; Mature: 21757

Theoretical pI: Translated: 12.42; Mature: 12.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETARFNRPARLLHWTMAALILAMLLTGAAMVTSLADYSTLVALHRPLGILILLLAGLR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LANRWRHAPPPLPANLPVWQRRAAHGSHILLYGLMLAMPLIGWAMLSAARYPVILAGPVV
HHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
LPPILPQDPMLYAALRRLHTVLAYGLFAVILAHLAAALLHALIRRDGVFASMAPWRSRPA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCC
GTAAPPKRRSRSLESLIRSP
CCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TETARFNRPARLLHWTMAALILAMLLTGAAMVTSLADYSTLVALHRPLGILILLLAGLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LANRWRHAPPPLPANLPVWQRRAAHGSHILLYGLMLAMPLIGWAMLSAARYPVILAGPVV
HHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
LPPILPQDPMLYAALRRLHTVLAYGLFAVILAHLAAALLHALIRRDGVFASMAPWRSRPA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCC
GTAAPPKRRSRSLESLIRSP
CCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA