| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is dps [C]
Identifier: 170750307
GI number: 170750307
Start: 4160211
End: 4160744
Strand: Direct
Name: dps [C]
Synonym: Mrad2831_3910
Alternate gene names: 170750307
Gene position: 4160211-4160744 (Clockwise)
Preceding gene: 170750306
Following gene: 170750309
Centisome position: 68.45
GC content: 66.29
Gene sequence:
>534_bases ATGGCCAAGGCCAAGCCGAGCAGCCGCATCGAGAGCGCGCGCCTGAACACCCCGACCGACCTCGATCCGAGCGACGTCCG GACGATCGCCGAGGGCCTGACGATCCTGAGCTCGGACCTGTTCGCGCTCTACATCAAGACCAAGAACTTTCACTGGCACA TGAGCGGACCCCATTTCCGCGACTACCACCTCCTGCTGGACGAGCAGTCCGCCCAGATCTTCGAGATCATCGACGCGGTG AACGAGCGCGCCCGCAAGATCGGCGGCACGGTCCTGCGCTCGCTCGGCCAGGCGAAGAGCCTGACCCGCGTGGCCGACAA CGACGCCGAGTACGTCTCGCCCCTCGACATGCTCAAGGAGCTGCGCGACGACAACAAGGCCCTCACCGCCAACATGCGGA CGCTCCACGGCGTCACCGACGAGGCCGGCGACGTGGCGACCACCTCGCAGCTCGAGGAGTGGATCGATCAGTCCGAGGAG CGGACGTGGTTCCTCTACGAGACCACCCGCAACGCGACCGACAGCGGCCACTGA
Upstream 100 bases:
>100_bases CCTCCCGACGGGCCGGTCATTGGCTCGCAGAAGGCGCGGCGGCCGCTCCCCGGAGAGACGGTTCGACGCGCCGAGCCACC GAACCGCACGGGAGACGACC
Downstream 100 bases:
>100_bases GCCGCGCCGCCCGGCCTCGGCACGGCCGGTGCCGGGTCGGGCCGCGTCGCCGCTAACCGGCGGCGAGATCGAGGTGCACC TTCACGAGGCCCGGATCGTC
Product: Ferritin Dps family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MAKAKPSSRIESARLNTPTDLDPSDVRTIAEGLTILSSDLFALYIKTKNFHWHMSGPHFRDYHLLLDEQSAQIFEIIDAV NERARKIGGTVLRSLGQAKSLTRVADNDAEYVSPLDMLKELRDDNKALTANMRTLHGVTDEAGDVATTSQLEEWIDQSEE RTWFLYETTRNATDSGH
Sequences:
>Translated_177_residues MAKAKPSSRIESARLNTPTDLDPSDVRTIAEGLTILSSDLFALYIKTKNFHWHMSGPHFRDYHLLLDEQSAQIFEIIDAV NERARKIGGTVLRSLGQAKSLTRVADNDAEYVSPLDMLKELRDDNKALTANMRTLHGVTDEAGDVATTSQLEEWIDQSEE RTWFLYETTRNATDSGH >Mature_176_residues AKAKPSSRIESARLNTPTDLDPSDVRTIAEGLTILSSDLFALYIKTKNFHWHMSGPHFRDYHLLLDEQSAQIFEIIDAVN ERARKIGGTVLRSLGQAKSLTRVADNDAEYVSPLDMLKELRDDNKALTANMRTLHGVTDEAGDVATTSQLEEWIDQSEER TWFLYETTRNATDSGH
Specific function: Unspecifically Binds And Protects DNA From Oxidative Damage Mediated By Hydrogen Peroxide. Iron-Storage Protein. [C]
COG id: COG0783
COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dps family [H]
Homologues:
None
Paralogues:
None
Copy number: 6720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002177 - InterPro: IPR023188 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 19950; Mature: 19819
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKAKPSSRIESARLNTPTDLDPSDVRTIAEGLTILSSDLFALYIKTKNFHWHMSGPHFR CCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCEEEECCCCCCC DYHLLLDEQSAQIFEIIDAVNERARKIGGTVLRSLGQAKSLTRVADNDAEYVSPLDMLKE CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH LRDDNKALTANMRTLHGVTDEAGDVATTSQLEEWIDQSEERTWFLYETTRNATDSGH HHCCCCEEHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC >Mature Secondary Structure AKAKPSSRIESARLNTPTDLDPSDVRTIAEGLTILSSDLFALYIKTKNFHWHMSGPHFR CCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCEEEECCCCCCC DYHLLLDEQSAQIFEIIDAVNERARKIGGTVLRSLGQAKSLTRVADNDAEYVSPLDMLKE CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH LRDDNKALTANMRTLHGVTDEAGDVATTSQLEEWIDQSEERTWFLYETTRNATDSGH HHCCCCEEHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA