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The map label for this gene is ycbB [H]

Identifier: 170750306

GI number: 170750306

Start: 4158287

End: 4160074

Strand: Direct

Name: ycbB [H]

Synonym: Mrad2831_3909

Alternate gene names: 170750306

Gene position: 4158287-4160074 (Clockwise)

Preceding gene: 170750304

Following gene: 170750307

Centisome position: 68.42

GC content: 74.72

Gene sequence:

>1788_bases
ATGGTCCCGGTCCAGCCCCGCCGTCACGCCCGCCCGCACGCCGCGCTGGGTGCGGGCCTGTCCCTGCTGGCCCTGCTCGG
AGCGCCGGGCGCCGCCCTGGCGCAGGGGGCCGGCGCCGCGCAGGCCGGCCCCGCGCCGGTGCCGCCGCTCGCCGTGCCGG
TCGCGGTGCCGCCCGCCGCCGCGGGCGAGACCGCGAAGGGCCAGGAGCCCCGGGCACCCGAGGCGAAGGGCGCCGCCGGC
CAGGCGGACACCAAGCGGGCCGAGACCAAGCCGCCCGAGCCCAGGGCGACCGAGGTCGTGCCGGAGCCTGTCCCGGTGCA
GGGCAAGGCGCAGGATGCCAAGGTCCAGAGCGCGAAGGTCCAGGACACCAAGGCGTCGGAGACCAGGGCGCAGCAGGCCA
AGCCTCAGGAGGCGGCCAAGAAGTCGCGCGAGCCGGCGCCGCTGGTCTACGCCAAGGTCTCCACCGACCCGAACCCGACG
CTGACGTCGCGGACGTTCCTCGACACGCTCCGGGCGGCCGAGCGCTACGCGGCCTTCGCGGAGGCCGGCGGCTGGGAGCG
GCTGCCCGAGGATCTCGCGCGCCTCAAGCCCGGCGAGCGCCACCCGGCGATCCCCGCCCTGCGCCACCACCTGACGCTCA
CCGGCGACCTGCCGGCGGACGCGCCCCCGAACGACCGCCTCGACCCGCCGCTGGTGGCGGCGATCGCGGCGTTCCAGGCC
CGTCACGGCCTGCCCGACAGCGGCGTCCTGGGCCGGCTCACCATCAACGCGCTCAACGTGCCGGCCGCGGTGCGCCAGCG
GCAGCTCGCCGCCTCGGCGGCCCGGCTGATGGGCTCGAAATTCCCGTTCGGCGAGCGCTACGTGGTGGTCAACATCCCGT
CCGCCGCCGTGGAGGCGGTGGAGAACGGCGCCGTCGCGCGCCGCTACGTCGCGGTGGTCGGCTCCCCCGACAAGGCGACG
CCGCCGGTGGAGACGCGGATCACCGACATCAACTTCAACCCGACCTGGACGGTCCCGGCCTCGGTGGTGAAGAACGAGAT
CATCCCGCAGATGCGCAGGAATCCGGGCTATCTCGCCAAGAACCACATCCGGATCCTCAGCCCGTCGGGCGAGGTCGACC
CGACCCGGATCGACTGGGCGGGCGAGAAGGCCGTCAACTACACGCTGCGCCAGGATCCCGGCTTCGACAATTCGCTCGGC
CAGGTGCGCATCGACATGCCGAACCGCTTTGCCGTCTACATGCACGATACGCCGGCGAAGTCGCTCTTCGCCGCGAGCGT
GCGCTTCCACAGCCACGGCTGCGTCCGGGTCGGACAGGTGAAGGAGCTGGTCGGCTGGCTGCTGCAGGGCACGGACGGCC
CCAACGGGCCGGGCACGAGTTGGGGCCCCATCGAGATCGAGACCGGCATCGCCGACGGCGAGCGCCGCGACATCAAGCTC
GCCAAGCCGATCCCGGTGACCTTCGTGTATCTCACCGGCTACGCCACGCCGGACGGGAAGGCGCATTTCCGCGACGACAT
CTACAACCTCGACACGCCGGCGGCCGAGCCCGCCGCCACCGGCACGATCCCGCCCGCGGCGGCTGCGGACGCGGGCGCCG
CGAAGCCGACCCCCGCCACCACCGCGCCGGCCACGCCCCGGCCCGGTGCCGCCCACGACGCGAAGCCGGTCCCGGCGCGG
GCCGCCGTGGCCAGGCCCGCACCGGCAAGGCCCGCCCCCGCCAAGCCGGCGGCGACCCGGCCCGGCCCGGAGCCCCGCAG
TTTGGAATCCGTCGAACCTATCCGCTAA

Upstream 100 bases:

>100_bases
AGCTCTCCGAGCCCGGTGAAGGCCGGAGGAGATTGGTAACCACGCCGGTCCATGATCCCGCCCGATCGCCCGGTCCCGGG
CGCCGTCGGGAGTGTTGCGT

Downstream 100 bases:

>100_bases
AGCCAACCCAGCCATGCGATTCTCGGAACGGCGGAACCTCCCGACGGGCCGGTCATTGGCTCGCAGAAGGCGCGGCGGCC
GCTCCCCGGAGAGACGGTTC

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 595; Mature: 595

Protein sequence:

>595_residues
MVPVQPRRHARPHAALGAGLSLLALLGAPGAALAQGAGAAQAGPAPVPPLAVPVAVPPAAAGETAKGQEPRAPEAKGAAG
QADTKRAETKPPEPRATEVVPEPVPVQGKAQDAKVQSAKVQDTKASETRAQQAKPQEAAKKSREPAPLVYAKVSTDPNPT
LTSRTFLDTLRAAERYAAFAEAGGWERLPEDLARLKPGERHPAIPALRHHLTLTGDLPADAPPNDRLDPPLVAAIAAFQA
RHGLPDSGVLGRLTINALNVPAAVRQRQLAASAARLMGSKFPFGERYVVVNIPSAAVEAVENGAVARRYVAVVGSPDKAT
PPVETRITDINFNPTWTVPASVVKNEIIPQMRRNPGYLAKNHIRILSPSGEVDPTRIDWAGEKAVNYTLRQDPGFDNSLG
QVRIDMPNRFAVYMHDTPAKSLFAASVRFHSHGCVRVGQVKELVGWLLQGTDGPNGPGTSWGPIEIETGIADGERRDIKL
AKPIPVTFVYLTGYATPDGKAHFRDDIYNLDTPAAEPAATGTIPPAAAADAGAAKPTPATTAPATPRPGAAHDAKPVPAR
AAVARPAPARPAPAKPAATRPGPEPRSLESVEPIR

Sequences:

>Translated_595_residues
MVPVQPRRHARPHAALGAGLSLLALLGAPGAALAQGAGAAQAGPAPVPPLAVPVAVPPAAAGETAKGQEPRAPEAKGAAG
QADTKRAETKPPEPRATEVVPEPVPVQGKAQDAKVQSAKVQDTKASETRAQQAKPQEAAKKSREPAPLVYAKVSTDPNPT
LTSRTFLDTLRAAERYAAFAEAGGWERLPEDLARLKPGERHPAIPALRHHLTLTGDLPADAPPNDRLDPPLVAAIAAFQA
RHGLPDSGVLGRLTINALNVPAAVRQRQLAASAARLMGSKFPFGERYVVVNIPSAAVEAVENGAVARRYVAVVGSPDKAT
PPVETRITDINFNPTWTVPASVVKNEIIPQMRRNPGYLAKNHIRILSPSGEVDPTRIDWAGEKAVNYTLRQDPGFDNSLG
QVRIDMPNRFAVYMHDTPAKSLFAASVRFHSHGCVRVGQVKELVGWLLQGTDGPNGPGTSWGPIEIETGIADGERRDIKL
AKPIPVTFVYLTGYATPDGKAHFRDDIYNLDTPAAEPAATGTIPPAAAADAGAAKPTPATTAPATPRPGAAHDAKPVPAR
AAVARPAPARPAPAKPAATRPGPEPRSLESVEPIR
>Mature_595_residues
MVPVQPRRHARPHAALGAGLSLLALLGAPGAALAQGAGAAQAGPAPVPPLAVPVAVPPAAAGETAKGQEPRAPEAKGAAG
QADTKRAETKPPEPRATEVVPEPVPVQGKAQDAKVQSAKVQDTKASETRAQQAKPQEAAKKSREPAPLVYAKVSTDPNPT
LTSRTFLDTLRAAERYAAFAEAGGWERLPEDLARLKPGERHPAIPALRHHLTLTGDLPADAPPNDRLDPPLVAAIAAFQA
RHGLPDSGVLGRLTINALNVPAAVRQRQLAASAARLMGSKFPFGERYVVVNIPSAAVEAVENGAVARRYVAVVGSPDKAT
PPVETRITDINFNPTWTVPASVVKNEIIPQMRRNPGYLAKNHIRILSPSGEVDPTRIDWAGEKAVNYTLRQDPGFDNSLG
QVRIDMPNRFAVYMHDTPAKSLFAASVRFHSHGCVRVGQVKELVGWLLQGTDGPNGPGTSWGPIEIETGIADGERRDIKL
AKPIPVTFVYLTGYATPDGKAHFRDDIYNLDTPAAEPAATGTIPPAAAADAGAAKPTPATTAPATPRPGAAHDAKPVPAR
AAVARPAPARPAPAKPAATRPGPEPRSLESVEPIR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=371, Percent_Identity=31.266846361186, Blast_Score=180, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 62375; Mature: 62375

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPVQPRRHARPHAALGAGLSLLALLGAPGAALAQGAGAAQAGPAPVPPLAVPVAVPPAA
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCC
AGETAKGQEPRAPEAKGAAGQADTKRAETKPPEPRATEVVPEPVPVQGKAQDAKVQSAKV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
QDTKASETRAQQAKPQEAAKKSREPAPLVYAKVSTDPNPTLTSRTFLDTLRAAERYAAFA
CCCHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
EAGGWERLPEDLARLKPGERHPAIPALRHHLTLTGDLPADAPPNDRLDPPLVAAIAAFQA
HCCCHHHHHHHHHHCCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
RHGLPDSGVLGRLTINALNVPAAVRQRQLAASAARLMGSKFPFGERYVVVNIPSAAVEAV
HCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHH
ENGAVARRYVAVVGSPDKATPPVETRITDINFNPTWTVPASVVKNEIIPQMRRNPGYLAK
HCCHHEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEC
NHIRILSPSGEVDPTRIDWAGEKAVNYTLRQDPGFDNSLGQVRIDMPNRFAVYMHDTPAK
CCEEEECCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCEEEEEEECCCHH
SLFAASVRFHSHGCVRVGQVKELVGWLLQGTDGPNGPGTSWGPIEIETGIADGERRDIKL
HHHHHHHEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEE
AKPIPVTFVYLTGYATPDGKAHFRDDIYNLDTPAAEPAATGTIPPAAAADAGAAKPTPAT
ECCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TAPATPRPGAAHDAKPVPARAAVARPAPARPAPAKPAATRPGPEPRSLESVEPIR
CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVPVQPRRHARPHAALGAGLSLLALLGAPGAALAQGAGAAQAGPAPVPPLAVPVAVPPAA
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCC
AGETAKGQEPRAPEAKGAAGQADTKRAETKPPEPRATEVVPEPVPVQGKAQDAKVQSAKV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
QDTKASETRAQQAKPQEAAKKSREPAPLVYAKVSTDPNPTLTSRTFLDTLRAAERYAAFA
CCCHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
EAGGWERLPEDLARLKPGERHPAIPALRHHLTLTGDLPADAPPNDRLDPPLVAAIAAFQA
HCCCHHHHHHHHHHCCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
RHGLPDSGVLGRLTINALNVPAAVRQRQLAASAARLMGSKFPFGERYVVVNIPSAAVEAV
HCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHH
ENGAVARRYVAVVGSPDKATPPVETRITDINFNPTWTVPASVVKNEIIPQMRRNPGYLAK
HCCHHEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEC
NHIRILSPSGEVDPTRIDWAGEKAVNYTLRQDPGFDNSLGQVRIDMPNRFAVYMHDTPAK
CCEEEECCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCEEEEEEECCCHH
SLFAASVRFHSHGCVRVGQVKELVGWLLQGTDGPNGPGTSWGPIEIETGIADGERRDIKL
HHHHHHHEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEE
AKPIPVTFVYLTGYATPDGKAHFRDDIYNLDTPAAEPAATGTIPPAAAADAGAAKPTPAT
ECCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TAPATPRPGAAHDAKPVPARAAVARPAPARPAPAKPAATRPGPEPRSLESVEPIR
CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]