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The map label for this gene is ycfS [H]

Identifier: 170750298

GI number: 170750298

Start: 4148059

End: 4148724

Strand: Reverse

Name: ycfS [H]

Synonym: Mrad2831_3901

Alternate gene names: 170750298

Gene position: 4148724-4148059 (Counterclockwise)

Preceding gene: 170750299

Following gene: 170750295

Centisome position: 68.26

GC content: 71.92

Gene sequence:

>666_bases
ATGCGTCGTTTTCTCCCCGCCCTGATCGGGCTTCTCGGCGCGGCCGCCTGCGCCGCGCCGGCTCTGGCCTACGAGATCGA
CCCGCTGACCCGCCAGCCGCTGAACGACGCGCTCACCGTTCGCGTCCGCCCGCAGGCCGTCGAGACCGTCGCGGTGCCGG
TGGCCAACGCCGCGCTGAACCCCGCCGACCCGCTGAACGCCGACGCGGCGGTGCCGCAGATGTCGGCGATCCCGCGCGAG
ACGGTGGCCTATAACGGTCCCTACGGCGCCGGCACGATCGTCGTCTCCACCGCCGAGCGGCGGCTCTACTACGTGCTGGG
CGGCGGTCAGGCCCTGCGCTACGGCGTCGGCGTCGGCCGGCCGGGCTTCACCTGGGGCGGCGTGCAGACCATCACGATGA
AGCGCGAGTGGCCGGATTGGCGCCCGCCGGCGACCATGCTGAAGCGCCGGCCCGACCTGCCGCGCTACATGAAGGGCGGT
CTCGAGAACCCGCTCGGCGCCCGCGCCATGTATCTCGGCGGCTCGATCTACCGCATCCACGGCTCCAACGAGCCGGAGAC
GATCGGCACGGCCGTCTCGTCGGGCTGCATCCGCATGACCAACGACGACGTGACGGACCTGTACACCCGCGCCAAGGTCG
GCACGAAGGTCATCGTCCAGCGCTGA

Upstream 100 bases:

>100_bases
GAGGCGCGAGCGTTTACCCCTTGGCGAGGATCGGCACGGCATCGTGCCGCGGTCTTCGCCGCGTTCCCGCCATAGTCCGC
GCCTGCCCCGAGAGGCTTTG

Downstream 100 bases:

>100_bases
TTGTCCGGGGCTTCCGGGGGAAGGGCCGGCCGCGAGGCCGGCCCTTCCGCGTTCAGGCCGCCGGCAGCGTGACCAGGGCG
TCCGGGCGCTTCACCTCGAT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRRFLPALIGLLGAAACAAPALAYEIDPLTRQPLNDALTVRVRPQAVETVAVPVANAALNPADPLNADAAVPQMSAIPRE
TVAYNGPYGAGTIVVSTAERRLYYVLGGGQALRYGVGVGRPGFTWGGVQTITMKREWPDWRPPATMLKRRPDLPRYMKGG
LENPLGARAMYLGGSIYRIHGSNEPETIGTAVSSGCIRMTNDDVTDLYTRAKVGTKVIVQR

Sequences:

>Translated_221_residues
MRRFLPALIGLLGAAACAAPALAYEIDPLTRQPLNDALTVRVRPQAVETVAVPVANAALNPADPLNADAAVPQMSAIPRE
TVAYNGPYGAGTIVVSTAERRLYYVLGGGQALRYGVGVGRPGFTWGGVQTITMKREWPDWRPPATMLKRRPDLPRYMKGG
LENPLGARAMYLGGSIYRIHGSNEPETIGTAVSSGCIRMTNDDVTDLYTRAKVGTKVIVQR
>Mature_221_residues
MRRFLPALIGLLGAAACAAPALAYEIDPLTRQPLNDALTVRVRPQAVETVAVPVANAALNPADPLNADAAVPQMSAIPRE
TVAYNGPYGAGTIVVSTAERRLYYVLGGGQALRYGVGVGRPGFTWGGVQTITMKREWPDWRPPATMLKRRPDLPRYMKGG
LENPLGARAMYLGGSIYRIHGSNEPETIGTAVSSGCIRMTNDDVTDLYTRAKVGTKVIVQR

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=151, Percent_Identity=37.7483443708609, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788299, Length=236, Percent_Identity=32.6271186440678, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787968, Length=234, Percent_Identity=32.0512820512821, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787040, Length=134, Percent_Identity=35.0746268656716, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 23733; Mature: 23733

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFLPALIGLLGAAACAAPALAYEIDPLTRQPLNDALTVRVRPQAVETVAVPVANAALN
CCHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCEEEEEECCCHHEEEEEEHHCCCCC
PADPLNADAAVPQMSAIPRETVAYNGPYGAGTIVVSTAERRLYYVLGGGQALRYGVGVGR
CCCCCCCCCCCCHHHCCCHHHEEECCCCCCCEEEEEECCCEEEEEEECCCEEEEECCCCC
PGFTWGGVQTITMKREWPDWRPPATMLKRRPDLPRYMKGGLENPLGARAMYLGGSIYRIH
CCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCEEEEECCEEEEEE
GSNEPETIGTAVSSGCIRMTNDDVTDLYTRAKVGTKVIVQR
CCCCCHHHHHHHHCCEEEECCCCHHHHHHHHHCCEEEEEEC
>Mature Secondary Structure
MRRFLPALIGLLGAAACAAPALAYEIDPLTRQPLNDALTVRVRPQAVETVAVPVANAALN
CCHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCEEEEEECCCHHEEEEEEHHCCCCC
PADPLNADAAVPQMSAIPRETVAYNGPYGAGTIVVSTAERRLYYVLGGGQALRYGVGVGR
CCCCCCCCCCCCHHHCCCHHHEEECCCCCCCEEEEEECCCEEEEEEECCCEEEEECCCCC
PGFTWGGVQTITMKREWPDWRPPATMLKRRPDLPRYMKGGLENPLGARAMYLGGSIYRIH
CCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCEEEEECCEEEEEE
GSNEPETIGTAVSSGCIRMTNDDVTDLYTRAKVGTKVIVQR
CCCCCHHHHHHHHCCEEEECCCCHHHHHHHHHCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]