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The map label for this gene is cbbR [H]

Identifier: 170749959

GI number: 170749959

Start: 3778516

End: 3779484

Strand: Direct

Name: cbbR [H]

Synonym: Mrad2831_3560

Alternate gene names: 170749959

Gene position: 3778516-3779484 (Clockwise)

Preceding gene: 170749954

Following gene: 170749960

Centisome position: 62.17

GC content: 71.41

Gene sequence:

>969_bases
ATGTCCGCCGAGAAATCCGCCATGCGCAACCTCTCCCTCAAGCAGCTTCAGGCGGTCGCTGCCGTGGCCCGCCTCGGCAC
CATGACCCGGGCTGCGCAGGAGCTGAACGTCACCTCGGCCGCCCTCTACGCGCGCATCCGACAGCTCGAGGAGGAGGCCG
GTCTGCTGCTGTTCGACCGGACGCCGGGCGGCCTCAAGCCGACGGATGCCGGCCGCGAGATGCTCTGGGCGATCGACAGC
ATCAACACGGTGCTGGAGACCTGCACCGACCGCCTGCGCACCCTGCGCGGCGCGGAGGGCGGGCGCGTGGCACTGGGCGT
CGTCTCCACCGCCAAGTACTTCGCCCCGCAGGTGATCGCGGGCTTCGTCAAGAAGCACCCCGGCGTCGAGATCAGCCTGT
CGGTGCGCAACCGCGGCCAGACCGTGGAGGCACTCCGCGGCTACGAGATCGACTTCGCCCTGATGGGCCGCCCGCCCCGG
GACTTCCCGATCGAGGCCGCCACGTTTGGGCCGCACCCGATCGTGCTGATCGCGCCGCCGGACCATCCCCTGGCGGGCAG
GACCGACCTGAACCGCGAGGACCTCGCCGACCAGCCGTTCTTCCTGCGCGAGGAGGGCTCGGGCACCCGCATGGTCTTCG
AGGAGTTCATGAGCGGCGTCCTGGTCAAGCGGGCGCCGCTGGACATCGACACCGGGTCGAACGAGACCATCAAGCAGGCG
GTGATGGCCGGGCTCGGGATCGCGCTGCTCTCGGTGCATTCCGTGGCGGCCGAGCTGGAGAGCGGGCGCCTCGTCCTCCT
CAACGTCAGGGGCCTGCCGATCCGGCGCGACTGGTACGCGGTCCGGCGCGCCGACAAGGTGCTGGGTCCGGCCGCCTCCG
CGGTCTGGTCCTACCTGATGTCGGAGGGCGCGCGCAGCCTCCCGGGCGTCGCCCAGAGCGGTCTCGTGCCGGCGGGAGCC
AGGGCGTGA

Upstream 100 bases:

>100_bases
GCTGCCAGGATAGCGGTCTCTGCCGCCGGATCGACAGGAACCCGCGGCCGGGCCTTCAAGATTTCTGTGCGATCTTGTGC
CATAGGACGAAAAAAACGAG

Downstream 100 bases:

>100_bases
GCGCCGGCGTCGTCGTGGCCGGGGCCGGGCAGGCCGGCTTCCAGCTCGCCGCCTCCTTGCGGGAGGGCGGGTTCCGGGAC
CCGATCACCCTGGTGGGCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: RuBisCO operon transcriptional regulator [H]

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MSAEKSAMRNLSLKQLQAVAAVARLGTMTRAAQELNVTSAALYARIRQLEEEAGLLLFDRTPGGLKPTDAGREMLWAIDS
INTVLETCTDRLRTLRGAEGGRVALGVVSTAKYFAPQVIAGFVKKHPGVEISLSVRNRGQTVEALRGYEIDFALMGRPPR
DFPIEAATFGPHPIVLIAPPDHPLAGRTDLNREDLADQPFFLREEGSGTRMVFEEFMSGVLVKRAPLDIDTGSNETIKQA
VMAGLGIALLSVHSVAAELESGRLVLLNVRGLPIRRDWYAVRRADKVLGPAASAVWSYLMSEGARSLPGVAQSGLVPAGA
RA

Sequences:

>Translated_322_residues
MSAEKSAMRNLSLKQLQAVAAVARLGTMTRAAQELNVTSAALYARIRQLEEEAGLLLFDRTPGGLKPTDAGREMLWAIDS
INTVLETCTDRLRTLRGAEGGRVALGVVSTAKYFAPQVIAGFVKKHPGVEISLSVRNRGQTVEALRGYEIDFALMGRPPR
DFPIEAATFGPHPIVLIAPPDHPLAGRTDLNREDLADQPFFLREEGSGTRMVFEEFMSGVLVKRAPLDIDTGSNETIKQA
VMAGLGIALLSVHSVAAELESGRLVLLNVRGLPIRRDWYAVRRADKVLGPAASAVWSYLMSEGARSLPGVAQSGLVPAGA
RA
>Mature_321_residues
SAEKSAMRNLSLKQLQAVAAVARLGTMTRAAQELNVTSAALYARIRQLEEEAGLLLFDRTPGGLKPTDAGREMLWAIDSI
NTVLETCTDRLRTLRGAEGGRVALGVVSTAKYFAPQVIAGFVKKHPGVEISLSVRNRGQTVEALRGYEIDFALMGRPPRD
FPIEAATFGPHPIVLIAPPDHPLAGRTDLNREDLADQPFFLREEGSGTRMVFEEFMSGVLVKRAPLDIDTGSNETIKQAV
MAGLGIALLSVHSVAAELESGRLVLLNVRGLPIRRDWYAVRRADKVLGPAASAVWSYLMSEGARSLPGVAQSGLVPAGAR
A

Specific function: Transcriptional activator for the cbb operon for RuBisCO and other Calvin cycle genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=255, Percent_Identity=30.1960784313725, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI145693105, Length=297, Percent_Identity=26.2626262626263, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788748, Length=297, Percent_Identity=23.9057239057239, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87082132, Length=259, Percent_Identity=26.6409266409266, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787879, Length=262, Percent_Identity=25.9541984732824, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790399, Length=268, Percent_Identity=27.6119402985075, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790262, Length=307, Percent_Identity=24.7557003257329, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789204, Length=251, Percent_Identity=24.3027888446215, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI157672245, Length=209, Percent_Identity=26.7942583732057, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787601, Length=180, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788887, Length=187, Percent_Identity=28.3422459893048, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787530, Length=256, Percent_Identity=25.390625, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789173, Length=258, Percent_Identity=27.5193798449612, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34663; Mature: 34532

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAEKSAMRNLSLKQLQAVAAVARLGTMTRAAQELNVTSAALYARIRQLEEEAGLLLFDR
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCEEEEEC
TPGGLKPTDAGREMLWAIDSINTVLETCTDRLRTLRGAEGGRVALGVVSTAKYFAPQVIA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHH
GFVKKHPGVEISLSVRNRGQTVEALRGYEIDFALMGRPPRDFPIEAATFGPHPIVLIAPP
HHHHCCCCCEEEEEECCCCCHHHHHCCCCEEEEEECCCCCCCCCEEECCCCCCEEEECCC
DHPLAGRTDLNREDLADQPFFLREEGSGTRMVFEEFMSGVLVKRAPLDIDTGSNETIKQA
CCCCCCCCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHCHHHCCCCCCCCCCCCHHHHHH
VMAGLGIALLSVHSVAAELESGRLVLLNVRGLPIRRDWYAVRRADKVLGPAASAVWSYLM
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
SEGARSLPGVAQSGLVPAGARA
HHCCCCCCCCHHCCCCCCCCCC
>Mature Secondary Structure 
SAEKSAMRNLSLKQLQAVAAVARLGTMTRAAQELNVTSAALYARIRQLEEEAGLLLFDR
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCEEEEEC
TPGGLKPTDAGREMLWAIDSINTVLETCTDRLRTLRGAEGGRVALGVVSTAKYFAPQVIA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHH
GFVKKHPGVEISLSVRNRGQTVEALRGYEIDFALMGRPPRDFPIEAATFGPHPIVLIAPP
HHHHCCCCCEEEEEECCCCCHHHHHCCCCEEEEEECCCCCCCCCEEECCCCCCEEEECCC
DHPLAGRTDLNREDLADQPFFLREEGSGTRMVFEEFMSGVLVKRAPLDIDTGSNETIKQA
CCCCCCCCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHCHHHCCCCCCCCCCCCHHHHHH
VMAGLGIALLSVHSVAAELESGRLVLLNVRGLPIRRDWYAVRRADKVLGPAASAVWSYLM
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
SEGARSLPGVAQSGLVPAGARA
HHCCCCCCCCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431 [H]