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The map label for this gene is ydfH [C]

Identifier: 170749616

GI number: 170749616

Start: 3398234

End: 3399088

Strand: Reverse

Name: ydfH [C]

Synonym: Mrad2831_3213

Alternate gene names: 170749616

Gene position: 3399088-3398234 (Counterclockwise)

Preceding gene: 170749617

Following gene: 170749615

Centisome position: 55.93

GC content: 71.58

Gene sequence:

>855_bases
ATGCATCCAGCGGACGTCCTGGATCCGAGTCCGGTGGCGGGACCGGCCCTGCGCGCCGATCTGCCGAAGGCGGCGCGGGT
CTACGCGACCCTGCGCGAGGCCATCATCGCCATGCAGCTGAAACCCGGCGCGCGCCTCGTGGAGAAGGATCTGTGCGACG
AGCTCGGCGTGTCGCGCACGCCCCTGCGGGACGCGATCCTCAGGCTCGCGCAGCAGCGGCTGGTGACCGTGGTCCCGAGC
GACGCCACCTTCGTCAACAAGATCATCCTGGACGAGGTGATCGAGGGCCAGCTCGTGCGCGAGAGCCTGGAGCTGCGGAT
GGTGGCCCTGGCAGCCGAGCGCTTCGAACCCGCCCGCCGGTCCGCCTTCGAGCTCGTCCTCTTCCGCGAGGCGGACGCGG
CACGGCGCGGCGACAACGCCGAATCCTTCGCCCTCGACAACGACTTCCACCGGCTCCTGTGCGCCTCTGCCGGTTTCCCC
CGCGTCTGGGACACGATCCACCTCGCCACCGGCCAGCTCGACCGCGTGCGGCGCAACGCCTTCCCGCTGCAGAATTATCA
CGTGGAGGTGCTCGACGAGCACAGGGCGATCTTCGAGGCGCTCTGCCGGCGGGACGCGGAGCATGCGGTCTCGCTCCTGC
GCACACATCTGGGCGGGACGCTGAACTCGTTGCGGATCCTGCTCGCCCGGGAGCCCGATTTCGTCGCGTTCGACCCCGCC
TCGCCGGCCTTCGCGCTGCTGAGGCGATCCGAGCAGGCCGGGGACGCTGCGCCGCCCGGAGGGGCCGAAGGATCGCCGAG
GCGGCGCGCCCGGCGCAGCGTCGCGGACCGCCGAACTGCGCCGGGAGCCGTGTAG

Upstream 100 bases:

>100_bases
TTCTCCGCCGAGCACGCCGCGCTGTTCCTTGAGGTCCTGGGAAAAACCCTGGACGGTGCGGCCTGACAAGAAGAACGAAA
GACCTGGCAGGAGACGACCC

Downstream 100 bases:

>100_bases
GGCGATGGTGATCCCCGTCGTTCTCAAGACCGTTCCGGAGCACGCCCGCGTCTGGCACCGCGTGTTCGCCCAGGAGGCGC
CGGAGCTGAGCCTGGTCGAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MHPADVLDPSPVAGPALRADLPKAARVYATLREAIIAMQLKPGARLVEKDLCDELGVSRTPLRDAILRLAQQRLVTVVPS
DATFVNKIILDEVIEGQLVRESLELRMVALAAERFEPARRSAFELVLFREADAARRGDNAESFALDNDFHRLLCASAGFP
RVWDTIHLATGQLDRVRRNAFPLQNYHVEVLDEHRAIFEALCRRDAEHAVSLLRTHLGGTLNSLRILLAREPDFVAFDPA
SPAFALLRRSEQAGDAAPPGGAEGSPRRRARRSVADRRTAPGAV

Sequences:

>Translated_284_residues
MHPADVLDPSPVAGPALRADLPKAARVYATLREAIIAMQLKPGARLVEKDLCDELGVSRTPLRDAILRLAQQRLVTVVPS
DATFVNKIILDEVIEGQLVRESLELRMVALAAERFEPARRSAFELVLFREADAARRGDNAESFALDNDFHRLLCASAGFP
RVWDTIHLATGQLDRVRRNAFPLQNYHVEVLDEHRAIFEALCRRDAEHAVSLLRTHLGGTLNSLRILLAREPDFVAFDPA
SPAFALLRRSEQAGDAAPPGGAEGSPRRRARRSVADRRTAPGAV
>Mature_284_residues
MHPADVLDPSPVAGPALRADLPKAARVYATLREAIIAMQLKPGARLVEKDLCDELGVSRTPLRDAILRLAQQRLVTVVPS
DATFVNKIILDEVIEGQLVRESLELRMVALAAERFEPARRSAFELVLFREADAARRGDNAESFALDNDFHRLLCASAGFP
RVWDTIHLATGQLDRVRRNAFPLQNYHVEVLDEHRAIFEALCRRDAEHAVSLLRTHLGGTLNSLRILLAREPDFVAFDPA
SPAFALLRRSEQAGDAAPPGGAEGSPRRRARRSVADRRTAPGAV

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=219, Percent_Identity=30.1369863013699, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI87081914, Length=127, Percent_Identity=32.2834645669291, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 31322; Mature: 31322

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPADVLDPSPVAGPALRADLPKAARVYATLREAIIAMQLKPGARLVEKDLCDELGVSRT
CCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
PLRDAILRLAQQRLVTVVPSDATFVNKIILDEVIEGQLVRESLELRMVALAAERFEPARR
CHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
SAFELVLFREADAARRGDNAESFALDNDFHRLLCASAGFPRVWDTIHLATGQLDRVRRNA
HHHHEEEEECCHHHHCCCCCCHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHC
FPLQNYHVEVLDEHRAIFEALCRRDAEHAVSLLRTHLGGTLNSLRILLAREPDFVAFDPA
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHEEEEECCCCEEEECCC
SPAFALLRRSEQAGDAAPPGGAEGSPRRRARRSVADRRTAPGAV
CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHPADVLDPSPVAGPALRADLPKAARVYATLREAIIAMQLKPGARLVEKDLCDELGVSRT
CCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
PLRDAILRLAQQRLVTVVPSDATFVNKIILDEVIEGQLVRESLELRMVALAAERFEPARR
CHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
SAFELVLFREADAARRGDNAESFALDNDFHRLLCASAGFPRVWDTIHLATGQLDRVRRNA
HHHHEEEEECCHHHHCCCCCCHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHC
FPLQNYHVEVLDEHRAIFEALCRRDAEHAVSLLRTHLGGTLNSLRILLAREPDFVAFDPA
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHEEEEECCCCEEEECCC
SPAFALLRRSEQAGDAAPPGGAEGSPRRRARRSVADRRTAPGAV
CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]