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The map label for this gene is yfdE [H]

Identifier: 170749261

GI number: 170749261

Start: 3004405

End: 3005541

Strand: Reverse

Name: yfdE [H]

Synonym: Mrad2831_2854

Alternate gene names: 170749261

Gene position: 3005541-3004405 (Counterclockwise)

Preceding gene: 170749262

Following gene: 170749260

Centisome position: 49.45

GC content: 73.53

Gene sequence:

>1137_bases
ATGAGCCAGAACCTGCCGCTGCGAGGGCTCACCGTGCTCGCCCTGGAGCAGGCGGTCGCCGCGCCCTACTGCACCTCGCG
GCTCGCCGATGCCGGGGCCCGGGTCATCAAGATCGAGCGGCCGGAGGGTGATTTCGCCCGCGGCTACGACTCGGCGGTCA
ACGGGCTGGCGAGCTACTTCGTCTGGCTCAACCGCGGCAAGGAGAGCCTCGTCGCCGACATCAAGGATCCGGCCGATGCC
CGCCTGCTGCACGCGATCCTCGCGCAGGCCGACGTGTTCGTGCAGAATCTCGCCCCCGGCGCGGCCGCCCGGGCGGGCTT
CGGCACGGCGGAGCTGCGGGCGCGCTATCCGCGGCTGATCACCGTCGACATCTCCGGTTACGGCACCGGCAACGCCTACA
GCGACATGAAGGCCTACGACCTGCTGGTCCAGGCCGAGAGCGGGCTCGCCGGGATCACCGGACATCCGGCCGGACCCGGG
CGCGTCGGCGTCTCCGTCTGCGACGTCGCCTGCGGGATGGACGCCCACGCCGCCGTTCTCGAGGCGCTGATCGCCCGCGG
GATCACCGGACAGGGCTGCGCCCTGGAGGTCAGCCTGTTCAGCGGCGCCGCCGACTGGATGAACGTGCCGCTGCTCTACT
TCGAGGGGACGGGGCAGGCCCCGCGGCGGGTCGGCCTCGCGCATCCCTCGATCTGCCCCTACGGCGCCTTCCCCACGGCC
GACGGCAGCCTGGTGCTGATCTCGATCCAGAACGAGCGCGAGTGGGCGAGTTTCTGCGCCGGCGTCCTCGGGGAGCCCGA
CCTCGCCCGGGCCGAGGGCTTCGCGTCCAACAATGCCCGGGTGGCCAACCGCGCCGCGGTCGACCTGCGCGTCGGCGCCG
AGCTGGTGCGGCTCAGCCGCGACGCGGCCGCCGCCCGGCTGAAGGCGGCGGGCACCGCCTACGGCTTCGTCAACACGCTG
GCGGATCTCGCCGCGCACCCGGCGCTGATCCGCGCGGAGGTCCGGACGCCTTCGGGGCCGGCCCGGATCGTGGCGCCGCC
GGTGCTGATCGACGGCGAGGTCCGCGCCCTCGGCCCGGTTCCGGCGATCGACGAGCACGGGGCGCGGATCCGGGAGGAAT
TCGGTCGCCGCGACTGA

Upstream 100 bases:

>100_bases
CCGGGCGGCCCTGTCACCGCAACACGCTTGGCGGGGAGGCTCGCCGTTCCAGTTCATTCGCTGCCGGCCCTCTGAGACCG
CGCGACGCCGAAGGATCCGG

Downstream 100 bases:

>100_bases
GGACTGCGATACGACGGCAGAACATGAACGGCGGGAGGAGACGATGAGACTGGACGGCAAGATCGCGCTCGTGACGGGGG
CTGGCAGCGGCTTCGGGGCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MSQNLPLRGLTVLALEQAVAAPYCTSRLADAGARVIKIERPEGDFARGYDSAVNGLASYFVWLNRGKESLVADIKDPADA
RLLHAILAQADVFVQNLAPGAAARAGFGTAELRARYPRLITVDISGYGTGNAYSDMKAYDLLVQAESGLAGITGHPAGPG
RVGVSVCDVACGMDAHAAVLEALIARGITGQGCALEVSLFSGAADWMNVPLLYFEGTGQAPRRVGLAHPSICPYGAFPTA
DGSLVLISIQNEREWASFCAGVLGEPDLARAEGFASNNARVANRAAVDLRVGAELVRLSRDAAAARLKAAGTAYGFVNTL
ADLAAHPALIRAEVRTPSGPARIVAPPVLIDGEVRALGPVPAIDEHGARIREEFGRRD

Sequences:

>Translated_378_residues
MSQNLPLRGLTVLALEQAVAAPYCTSRLADAGARVIKIERPEGDFARGYDSAVNGLASYFVWLNRGKESLVADIKDPADA
RLLHAILAQADVFVQNLAPGAAARAGFGTAELRARYPRLITVDISGYGTGNAYSDMKAYDLLVQAESGLAGITGHPAGPG
RVGVSVCDVACGMDAHAAVLEALIARGITGQGCALEVSLFSGAADWMNVPLLYFEGTGQAPRRVGLAHPSICPYGAFPTA
DGSLVLISIQNEREWASFCAGVLGEPDLARAEGFASNNARVANRAAVDLRVGAELVRLSRDAAAARLKAAGTAYGFVNTL
ADLAAHPALIRAEVRTPSGPARIVAPPVLIDGEVRALGPVPAIDEHGARIREEFGRRD
>Mature_377_residues
SQNLPLRGLTVLALEQAVAAPYCTSRLADAGARVIKIERPEGDFARGYDSAVNGLASYFVWLNRGKESLVADIKDPADAR
LLHAILAQADVFVQNLAPGAAARAGFGTAELRARYPRLITVDISGYGTGNAYSDMKAYDLLVQAESGLAGITGHPAGPGR
VGVSVCDVACGMDAHAAVLEALIARGITGQGCALEVSLFSGAADWMNVPLLYFEGTGQAPRRVGLAHPSICPYGAFPTAD
GSLVLISIQNEREWASFCAGVLGEPDLARAEGFASNNARVANRAAVDLRVGAELVRLSRDAAAARLKAAGTAYGFVNTLA
DLAAHPALIRAEVRTPSGPARIVAPPVLIDGEVRALGPVPAIDEHGARIREEFGRRD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=391, Percent_Identity=31.9693094629156, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI300863124, Length=417, Percent_Identity=30.4556354916067, Blast_Score=176, Evalue=4e-44,
Organism=Homo sapiens, GI300863126, Length=389, Percent_Identity=29.0488431876607, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI13376042, Length=417, Percent_Identity=27.5779376498801, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI42794625, Length=253, Percent_Identity=27.6679841897233, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI266456254, Length=253, Percent_Identity=27.6679841897233, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI266458397, Length=253, Percent_Identity=27.6679841897233, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI266458393, Length=251, Percent_Identity=27.8884462151394, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=31.25, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=31.25, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI87082093, Length=373, Percent_Identity=30.2949061662198, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI1788717, Length=403, Percent_Identity=27.0471464019851, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI32564160, Length=248, Percent_Identity=25.4032258064516, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24648431, Length=357, Percent_Identity=35.0140056022409, Blast_Score=170, Evalue=1e-42,
Organism=Drosophila melanogaster, GI24585488, Length=203, Percent_Identity=24.6305418719212, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39503; Mature: 39372

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNLPLRGLTVLALEQAVAAPYCTSRLADAGARVIKIERPEGDFARGYDSAVNGLASYF
CCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
VWLNRGKESLVADIKDPADARLLHAILAQADVFVQNLAPGAAARAGFGTAELRARYPRLI
HHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHCCCEEE
TVDISGYGTGNAYSDMKAYDLLVQAESGLAGITGHPAGPGRVGVSVCDVACGMDAHAAVL
EEEECCCCCCCCCCCHHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHH
EALIARGITGQGCALEVSLFSGAADWMNVPLLYFEGTGQAPRRVGLAHPSICPYGAFPTA
HHHHHCCCCCCCCEEEEEEECCCHHHHCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCC
DGSLVLISIQNEREWASFCAGVLGEPDLARAEGFASNNARVANRAAVDLRVGAELVRLSR
CCCEEEEEECCCHHHHHHHHHHCCCCCHHHHCCCCCCCCEECHHEEEEHHHHHHHHHHHH
DAAAARLKAAGTAYGFVNTLADLAAHPALIRAEVRTPSGPARIVAPPVLIDGEVRALGPV
HHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEECCEEECCCEEECCCC
PAIDEHGARIREEFGRRD
CCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQNLPLRGLTVLALEQAVAAPYCTSRLADAGARVIKIERPEGDFARGYDSAVNGLASYF
CCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
VWLNRGKESLVADIKDPADARLLHAILAQADVFVQNLAPGAAARAGFGTAELRARYPRLI
HHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHCCCEEE
TVDISGYGTGNAYSDMKAYDLLVQAESGLAGITGHPAGPGRVGVSVCDVACGMDAHAAVL
EEEECCCCCCCCCCCHHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHH
EALIARGITGQGCALEVSLFSGAADWMNVPLLYFEGTGQAPRRVGLAHPSICPYGAFPTA
HHHHHCCCCCCCCEEEEEEECCCHHHHCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCC
DGSLVLISIQNEREWASFCAGVLGEPDLARAEGFASNNARVANRAAVDLRVGAELVRLSR
CCCEEEEEECCCHHHHHHHHHHCCCCCHHHHCCCCCCCCEECHHEEEEHHHHHHHHHHHH
DAAAARLKAAGTAYGFVNTLADLAAHPALIRAEVRTPSGPARIVAPPVLIDGEVRALGPV
HHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEECCEEECCCEEECCCC
PAIDEHGARIREEFGRRD
CCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]