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The map label for this gene is ycaN [H]

Identifier: 170748352

GI number: 170748352

Start: 2057408

End: 2058328

Strand: Reverse

Name: ycaN [H]

Synonym: Mrad2831_1934

Alternate gene names: 170748352

Gene position: 2058328-2057408 (Counterclockwise)

Preceding gene: 170748354

Following gene: 170748348

Centisome position: 33.87

GC content: 76.76

Gene sequence:

>921_bases
ATGACCCGGGATCTCACCGACCTCGCCGCCTTCGTGACCGTGGCGCGGGCCGGCGGGTTCCGCGAGGGCGCCCGCGCCGG
GGGCGGGAGCGCGTCGAGCCTCAGCGAGGCGGTGCGCCGGCTGGAGGCGGGGCTCGGCGTGCGCCTCCTGAACCGCACCA
CCCGCAGCGTCGCGCCGACCGAGGCCGGGACCCGCCTGCTGGAGCGGCTCGGCCCGGCGCTCGCCGAGGTGGAATCCGCC
CTCGACGTGGTGAACGGGTTCCGCGACCGGCCGGCCGGGACGCTGCGGCTCAACGTGCCGCTCAGCGCCGCCCGGCTGGT
GCTGCCGGCACTCGTGCCGCCCTTCCTGGCGGCCTACCCGGAGATCCGCCTGGAGGTGGTGGTCGAGGACGGGTTCGTGG
ACGTGCTGGCGGCGGGCTGCGACGCCGGCATCCGCTACGACGAGCGGCTGGAGCAGGACATGATCGCCGTGCCGATCGGC
CCGCGGCGGCAGCGCTTCGCCACCGCGGCGTCCCCGGCCTATCTCGACCGGCGCGGCCGGCCGGAGCATCCGCGGGACCT
CCTCGACCATGCCTGCCTGCTCGGCCGCTTCCCCAGCGGCGCGCTGACGGCGCCGTGGGAGTTCGAGCGCGACGGCGCGA
TCGTCCGGGTGGACCCGACCGGGCCGCTGATCGTGCGGGTCGGCGCCAGCGACCTCGCGGTGGAGGCCGCGGTCGCCGGC
ACCGGGATCGTCCACCTGTTCGAGGACTGGCTGCGGCCGCGGCTCGACGGCGGCGCCCTGGAGCCGGTGCTGGAACCCTG
GTGGCAGGACTTCCCCGGCCCGTTCCTCTACTACCCCGGCCGGCGGCACCTGCCGGCGCCGCTGCGCGCCTTCGTGGACT
TCGTCGGCGCGCAGGCGTCGCGCGCTAGAACCGCAGGGTGA

Upstream 100 bases:

>100_bases
TCGGTCATGACGTATCTCCTGTGGGCGCCCCGGATGTAGACGCCCGGTTTTGCGCCGATAAGCCGTGACAATCGGCACGG
CCTGTGCGGATTCTCGAACG

Downstream 100 bases:

>100_bases
AGCCGCCCGTCACGGCCTGATCCCGCGCGCGGGCGCCGGTCTGGCCCGTGTAGGCCACGCCCAGGCTCGCGTCCGGCGTC
ACCGCCAGCTCGAGCCCGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MTRDLTDLAAFVTVARAGGFREGARAGGGSASSLSEAVRRLEAGLGVRLLNRTTRSVAPTEAGTRLLERLGPALAEVESA
LDVVNGFRDRPAGTLRLNVPLSAARLVLPALVPPFLAAYPEIRLEVVVEDGFVDVLAAGCDAGIRYDERLEQDMIAVPIG
PRRQRFATAASPAYLDRRGRPEHPRDLLDHACLLGRFPSGALTAPWEFERDGAIVRVDPTGPLIVRVGASDLAVEAAVAG
TGIVHLFEDWLRPRLDGGALEPVLEPWWQDFPGPFLYYPGRRHLPAPLRAFVDFVGAQASRARTAG

Sequences:

>Translated_306_residues
MTRDLTDLAAFVTVARAGGFREGARAGGGSASSLSEAVRRLEAGLGVRLLNRTTRSVAPTEAGTRLLERLGPALAEVESA
LDVVNGFRDRPAGTLRLNVPLSAARLVLPALVPPFLAAYPEIRLEVVVEDGFVDVLAAGCDAGIRYDERLEQDMIAVPIG
PRRQRFATAASPAYLDRRGRPEHPRDLLDHACLLGRFPSGALTAPWEFERDGAIVRVDPTGPLIVRVGASDLAVEAAVAG
TGIVHLFEDWLRPRLDGGALEPVLEPWWQDFPGPFLYYPGRRHLPAPLRAFVDFVGAQASRARTAG
>Mature_305_residues
TRDLTDLAAFVTVARAGGFREGARAGGGSASSLSEAVRRLEAGLGVRLLNRTTRSVAPTEAGTRLLERLGPALAEVESAL
DVVNGFRDRPAGTLRLNVPLSAARLVLPALVPPFLAAYPEIRLEVVVEDGFVDVLAAGCDAGIRYDERLEQDMIAVPIGP
RRQRFATAASPAYLDRRGRPEHPRDLLDHACLLGRFPSGALTAPWEFERDGAIVRVDPTGPLIVRVGASDLAVEAAVAGT
GIVHLFEDWLRPRLDGGALEPVLEPWWQDFPGPFLYYPGRRHLPAPLRAFVDFVGAQASRARTAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=307, Percent_Identity=40.7166123778502, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=37.5862068965517, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=29.7658862876254, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=29.3515358361775, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=29.3918918918919, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=29.757785467128, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789440, Length=296, Percent_Identity=25.6756756756757, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1786448, Length=294, Percent_Identity=27.2108843537415, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787601, Length=124, Percent_Identity=26.6129032258064, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32935; Mature: 32804

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRDLTDLAAFVTVARAGGFREGARAGGGSASSLSEAVRRLEAGLGVRLLNRTTRSVAPT
CCCCHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
EAGTRLLERLGPALAEVESALDVVNGFRDRPAGTLRLNVPLSAARLVLPALVPPFLAAYP
HHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCC
EIRLEVVVEDGFVDVLAAGCDAGIRYDERLEQDMIAVPIGPRRQRFATAASPAYLDRRGR
CEEEEEEEECCHHHHHHHCCCCCCCHHHHHHHCEEECCCCCCHHHHHHHCCCHHHHCCCC
PEHPRDLLDHACLLGRFPSGALTAPWEFERDGAIVRVDPTGPLIVRVGASDLAVEAAVAG
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCHHHHHHHHHC
TGIVHLFEDWLRPRLDGGALEPVLEPWWQDFPGPFLYYPGRRHLPAPLRAFVDFVGAQAS
CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCHHH
RARTAG
HHCCCC
>Mature Secondary Structure 
TRDLTDLAAFVTVARAGGFREGARAGGGSASSLSEAVRRLEAGLGVRLLNRTTRSVAPT
CCCHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
EAGTRLLERLGPALAEVESALDVVNGFRDRPAGTLRLNVPLSAARLVLPALVPPFLAAYP
HHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCC
EIRLEVVVEDGFVDVLAAGCDAGIRYDERLEQDMIAVPIGPRRQRFATAASPAYLDRRGR
CEEEEEEEECCHHHHHHHCCCCCCCHHHHHHHCEEECCCCCCHHHHHHHCCCHHHHCCCC
PEHPRDLLDHACLLGRFPSGALTAPWEFERDGAIVRVDPTGPLIVRVGASDLAVEAAVAG
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCHHHHHHHHHC
TGIVHLFEDWLRPRLDGGALEPVLEPWWQDFPGPFLYYPGRRHLPAPLRAFVDFVGAQAS
CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCHHH
RARTAG
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]