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The map label for this gene is fliN [H]

Identifier: 170683738

GI number: 170683738

Start: 1237869

End: 1238282

Strand: Reverse

Name: fliN [H]

Synonym: EcSMS35_1238

Alternate gene names: 170683738

Gene position: 1238282-1237869 (Counterclockwise)

Preceding gene: 170684212

Following gene: 170682928

Centisome position: 24.43

GC content: 54.35

Gene sequence:

>414_bases
ATGAGTGACATGAATAATCCGGCCGATGACAACAACGGCGCAATGGACGATCTGTGGGCTGAAGCGTTGAGCGAACAAAA
ATCAACCAACAGCAAAAGCGCTGCCGACGCGGTGTTCCAGCAATTTGGCGGTGGTGATGTCAGCGGAACGTTGCAGGATA
TCGACCTGATTATGGATATTCCGGTCAAGCTGACCGTCGAGCTGGGCCGTACGCGGATGACCATCAAAGAGCTGTTGCGT
CTGACGCAAGGGTCCGTCGTGGCGCTGGACGGTCTGGCGGGCGAACCACTGGATATTCTGATCAACGGTTATTTAATCGC
CCAGGGCGAAGTTGTCGTAGTCGCTGATAAATATGGCGTGCGGATCACCGATATTATTACCCCGTCTGAGCGAATGCGTC
GCCTGAGCCGTTAG

Upstream 100 bases:

>100_bases
TGCTGACCAGTCAGTACGGCACCCTCAACGGTCAGTATGCGTTACGGATAGAACATTTGATTAACCCGATTTTAAATTCT
CTGAACGAGGAACAGCCCAA

Downstream 100 bases:

>100_bases
TGATGAATAACCACGCTACTGTGCAATCTTCCGCGCCGGTTTCTGCTGCGCCACTGCTGCAGGTGAGCGGCGCACTCATC
GCCATTATTGCCCTGATCCT

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSDMNNPADDNNGAMDDLWAEALSEQKSTNSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR
LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR

Sequences:

>Translated_137_residues
MSDMNNPADDNNGAMDDLWAEALSEQKSTNSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR
LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR
>Mature_136_residues
SDMNNPADDNNGAMDDLWAEALSEQKSTNSKSAADAVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRL
TQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=137, Percent_Identity=97.8102189781022, Blast_Score=270, Evalue=3e-74,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 14838; Mature: 14707

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDMNNPADDNNGAMDDLWAEALSEQKSTNSKSAADAVFQQFGGGDVSGTLQDIDLIMDI
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHEEECC
PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
CEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCE
RITDIITPSERMRRLSR
EEEEEECCHHHHHHHCC
>Mature Secondary Structure 
SDMNNPADDNNGAMDDLWAEALSEQKSTNSKSAADAVFQQFGGGDVSGTLQDIDLIMDI
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHEEECC
PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
CEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCE
RITDIITPSERMRRLSR
EEEEEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]