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The map label for this gene is cas1 [H]

Identifier: 170681830

GI number: 170681830

Start: 2952596

End: 2953519

Strand: Reverse

Name: cas1 [H]

Synonym: EcSMS35_2883

Alternate gene names: 170681830

Gene position: 2953519-2952596 (Counterclockwise)

Preceding gene: 170681320

Following gene: 170684220

Centisome position: 58.27

GC content: 51.62

Gene sequence:

>924_bases
GTGACGTTTGTACCACTGAGTCCGATCCCGTTAAAAGATCGCACATCTATGATCTTCCTCCAGTACGGTCAGGTCGACGT
ACTGGACGGCGCTTTCGTGCTGATCGACAAAACCGGGATCCGCACGCATATTCCAGTGGGATCGGTCGCCTGCATTATGC
TCGAACCGGGAACAAGAGTTTCCCACGCGGCAGTCCATCTGGCCGCCACGGTGGGAACACTGCTGGTCTGGGTCGGTGAA
GCGGGCGTTCGCGTTTACTCCTCCGGACAACCCGGAGGGGCGCGGGCAGATAAATTACTCTACCAGGCAAAGCTGGCTTT
AACGGAAGATCTACGGTTGAAGGTGGTGCGCAAAATGTATGAATTACGTTTTCGTGAACCACCGCCAGCTCGCCGTTCAG
TGGAGCAGTTACGGGGAATTGAGGGATCCCGTGTTCGCCAGACCTATGCATTACTGGCGAAGCAATATGGTGTGAAATGG
AATGGTCGCAAATACGATCCTAAAGACTGGGAAAAAGGCGATGTTGTCAATCGCTGCATCAGTGCTGCCACATCATGCCT
GTACGGTATATCTGAAGCGGCGGTATTAGCCGCGGGATATGCGCCCGCTATTGGATTTATCCATAGTGGCAAACCGCTTT
CATTTGTTTATGACATAGCCGATATCATTAAATTTGATTTGGTTGTGCCAAAGGCATTTGAAATAGCGGCAAGACACCCG
GCAGAACCTGATAAAGAAGTGAGACTGGCCTGCCGTGATATTTTCCGTAGTAGTAAATTAACGGGCAAATTAATTCCGTT
AATTGAGGAAGTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCACCAGCTATCCCGGAAC
CTGAATTGCTAGGTGATAGTGGTCACCGGGGGCGCAGCGGATGA

Upstream 100 bases:

>100_bases
TCACCGATCCAGGGTTATTTCTGCAACGTCTCTGCCTGGGGTATGGCAAAAGCCGGGCGTTCGGCTGTGGTCTGATGTTA
ATCAAACCCGGAGCAGAGGC

Downstream 100 bases:

>100_bases
GCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCC
GGTGTTTATGTTGGTGATAC

Product: CRISPR-associated Cas1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MTFVPLSPIPLKDRTSMIFLQYGQVDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGE
AGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKW
NGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDLVVPKAFEIAARHP
AEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPELLGDSGHRGRSG

Sequences:

>Translated_307_residues
MTFVPLSPIPLKDRTSMIFLQYGQVDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGE
AGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKW
NGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDLVVPKAFEIAARHP
AEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPELLGDSGHRGRSG
>Mature_306_residues
TFVPLSPIPLKDRTSMIFLQYGQVDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEA
GVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWN
GRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDLVVPKAFEIAARHPA
EPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPELLGDSGHRGRSG

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=303, Percent_Identity=85.1485148514851, Blast_Score=533, Evalue=1e-153,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 33488; Mature: 33357

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFVPLSPIPLKDRTSMIFLQYGQVDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRV
CCCCCCCCCCCCCCCCEEEEEECCEEEECCEEEEEECCCCEEECCCCCEEEEEECCCCCH
SHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMY
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCI
HHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
SAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDLVVPKAFEIAARHP
HHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCC
AEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPELLGDS
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCC
GHRGRSG
CCCCCCC
>Mature Secondary Structure 
TFVPLSPIPLKDRTSMIFLQYGQVDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRV
CCCCCCCCCCCCCCCEEEEEECCEEEECCEEEEEECCCCEEECCCCCEEEEEECCCCCH
SHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMY
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCI
HHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
SAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDLVVPKAFEIAARHP
HHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCC
AEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPELLGDS
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCC
GHRGRSG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]