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The map label for this gene is cph2 [H]

Identifier: 170079401

GI number: 170079401

Start: 2939268

End: 2940338

Strand: Reverse

Name: cph2 [H]

Synonym: SYNPCC7002_A2815

Alternate gene names: 170079401

Gene position: 2940338-2939268 (Counterclockwise)

Preceding gene: 170079402

Following gene: 170079396

Centisome position: 97.75

GC content: 47.53

Gene sequence:

>1071_bases
ATGACCGCTGATTCTGTCTCAATGCAGGATGATCAACCGTTAATTCTTGTCATTGATGACGATCCAATTTCGCGTCGCCT
GATTCGTTTTTGGATGGAAAAAGAAGGTTATGCAGTCGCTGAAGCAACCAATGGTCAAGAGGGACTAGAAATATTCCAAA
AAACCATGCCCGATATTATCCTGTTGGATTTTATGATGCCGGTCATGGATGGCTTGGAATTTTGTAATGCCTTTCGACAA
CTCCAAGCTAGCACTGAAATTTCTCCTGCAAAAAATACTGAAATTTCCCAGGAAACTTTTCTGCTTCGTCACGAATTGGT
GGCCTACCAACAAGCAGAAGATCTACTGACAAAGATTGCCCGCACTCCCATCTTGATGATTACGGCCCGGGAAGATGACG
AATCAGTCACCAAGGCCTTTACCGCCGGGGCAACGGATTTCATCACCAAACCGATCCACTGGACAATTTTGCGCCAACGG
GTGCGCCACCTCATTTATCAGGCAAAGCTTTACCAACGTTTGGAAGCGACGAATGTGCAATTGCAACGGTTAGCGGCTTT
AGATCCTTTGACCCAACTGGCGAATCGTCGAGTTTTTGATTTGGTTTTAGAGCGTCAATGGCGACTGATGCTCCGCAATC
AAATACCTCTCTCGATTATTTTCATTGATGTGGATTTTTTTAAAAATTACAATGATACCTATGGTCACCAGGCTGGGGAT
CATTGTTTGTTTGAAGTAGCCCAGGCGATCGCCAGCCAAGTGAAGCGACCCACAGATTTAGTTTCCCGTTATGGTGGCGA
AGAGATCATCGTCATCTTGCCAGATACCCCCGGTGTTGGGGCGCAATTACTGGGAGAAAATATCATCGAGCAAGTCCGCA
GTTTGCAGATTCCCCACCAGAGCTCTTTGGTAGCGCCGATTGTCACGGTCAGTTTGGGGGTTGCCTCCATTGAACCAGGC
TGTGTGACGACGAATCCAGAAAAATTTGTCGCCCTGGCGGATGTCGCGCTATACGAAGCCAAGGCCCGTGGCCGTAATCA
AATGGTCGCTAAGGTGTGGGGCCAGGATTAA

Upstream 100 bases:

>100_bases
GAAAATCTCTGAAAGGTCGTCAAATTAACATCAGAGGGCCGATTGCCTAGGACAGTAACCCGTTAGAATAACCATATAGT
TCTTTTTGTGCCTAGAATCT

Downstream 100 bases:

>100_bases
TCACTTGATAAATAGCAGAGTAGTCTGCCTCGGCGAGATTCAAGGCGATCGCCTGCTCGATAATTTCTCGAATGCCTTCT
AGCCCCGTGGTCTCAAGGCC

Product: two-component response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MTADSVSMQDDQPLILVIDDDPISRRLIRFWMEKEGYAVAEATNGQEGLEIFQKTMPDIILLDFMMPVMDGLEFCNAFRQ
LQASTEISPAKNTEISQETFLLRHELVAYQQAEDLLTKIARTPILMITAREDDESVTKAFTAGATDFITKPIHWTILRQR
VRHLIYQAKLYQRLEATNVQLQRLAALDPLTQLANRRVFDLVLERQWRLMLRNQIPLSIIFIDVDFFKNYNDTYGHQAGD
HCLFEVAQAIASQVKRPTDLVSRYGGEEIIVILPDTPGVGAQLLGENIIEQVRSLQIPHQSSLVAPIVTVSLGVASIEPG
CVTTNPEKFVALADVALYEAKARGRNQMVAKVWGQD

Sequences:

>Translated_356_residues
MTADSVSMQDDQPLILVIDDDPISRRLIRFWMEKEGYAVAEATNGQEGLEIFQKTMPDIILLDFMMPVMDGLEFCNAFRQ
LQASTEISPAKNTEISQETFLLRHELVAYQQAEDLLTKIARTPILMITAREDDESVTKAFTAGATDFITKPIHWTILRQR
VRHLIYQAKLYQRLEATNVQLQRLAALDPLTQLANRRVFDLVLERQWRLMLRNQIPLSIIFIDVDFFKNYNDTYGHQAGD
HCLFEVAQAIASQVKRPTDLVSRYGGEEIIVILPDTPGVGAQLLGENIIEQVRSLQIPHQSSLVAPIVTVSLGVASIEPG
CVTTNPEKFVALADVALYEAKARGRNQMVAKVWGQD
>Mature_355_residues
TADSVSMQDDQPLILVIDDDPISRRLIRFWMEKEGYAVAEATNGQEGLEIFQKTMPDIILLDFMMPVMDGLEFCNAFRQL
QASTEISPAKNTEISQETFLLRHELVAYQQAEDLLTKIARTPILMITAREDDESVTKAFTAGATDFITKPIHWTILRQRV
RHLIYQAKLYQRLEATNVQLQRLAALDPLTQLANRRVFDLVLERQWRLMLRNQIPLSIIFIDVDFFKNYNDTYGHQAGDH
CLFEVAQAIASQVKRPTDLVSRYGGEEIIVILPDTPGVGAQLLGENIIEQVRSLQIPHQSSLVAPIVTVSLGVASIEPGC
VTTNPEKFVALADVALYEAKARGRNQMVAKVWGQD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=208, Percent_Identity=32.6923076923077, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=35.8823529411765, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=39.1061452513966, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87082007, Length=251, Percent_Identity=33.0677290836653, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=217, Percent_Identity=27.6497695852535, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=36.3095238095238, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=32.3699421965318, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=29.8245614035088, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787802, Length=179, Percent_Identity=31.2849162011173, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=226, Percent_Identity=26.9911504424779, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788956, Length=192, Percent_Identity=31.7708333333333, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787056, Length=168, Percent_Identity=34.5238095238095, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081974, Length=116, Percent_Identity=36.2068965517241, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 40182; Mature: 40051

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADSVSMQDDQPLILVIDDDPISRRLIRFWMEKEGYAVAEATNGQEGLEIFQKTMPDII
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCHHH
LLDFMMPVMDGLEFCNAFRQLQASTEISPAKNTEISQETFLLRHELVAYQQAEDLLTKIA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RTPILMITAREDDESVTKAFTAGATDFITKPIHWTILRQRVRHLIYQAKLYQRLEATNVQ
CCCEEEEEECCCCHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQRLAALDPLTQLANRRVFDLVLERQWRLMLRNQIPLSIIFIDVDFFKNYNDTYGHQAGD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCCCCCCH
HCLFEVAQAIASQVKRPTDLVSRYGGEEIIVILPDTPGVGAQLLGENIIEQVRSLQIPHQ
HHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
SSLVAPIVTVSLGVASIEPGCVTTNPEKFVALADVALYEAKARGRNQMVAKVWGQD
CCHHHHHHHHHHCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
>Mature Secondary Structure 
TADSVSMQDDQPLILVIDDDPISRRLIRFWMEKEGYAVAEATNGQEGLEIFQKTMPDII
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCHHH
LLDFMMPVMDGLEFCNAFRQLQASTEISPAKNTEISQETFLLRHELVAYQQAEDLLTKIA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RTPILMITAREDDESVTKAFTAGATDFITKPIHWTILRQRVRHLIYQAKLYQRLEATNVQ
CCCEEEEEECCCCHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQRLAALDPLTQLANRRVFDLVLERQWRLMLRNQIPLSIIFIDVDFFKNYNDTYGHQAGD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCCCCCCH
HCLFEVAQAIASQVKRPTDLVSRYGGEEIIVILPDTPGVGAQLLGENIIEQVRSLQIPHQ
HHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
SSLVAPIVTVSLGVASIEPGCVTTNPEKFVALADVALYEAKARGRNQMVAKVWGQD
CCHHHHHHHHHHCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]