Click here to switch to the map view.

The map label for this gene is ychJ [H]

Identifier: 170079333

GI number: 170079333

Start: 2868183

End: 2868686

Strand: Reverse

Name: ychJ [H]

Synonym: SYNPCC7002_A2742

Alternate gene names: 170079333

Gene position: 2868686-2868183 (Counterclockwise)

Preceding gene: 170079334

Following gene: 170079330

Centisome position: 95.37

GC content: 52.38

Gene sequence:

>504_bases
TTGCCTGTGTTAATTTCTGGCGATCGCCCTAGCCGTCTTTGTCCCTGCGGCAGTCAAAAGCCTTTGGCCCAATGTTGTGC
CCCTTATCTTCAAGGTCAACTGGCTGCCCCCACCGCCGAAGCCCTGATGCAATCGCGCTACACCGCCTACTGTTTTCGGG
ATGTGGATTACCTGCTGAAGACGGAACATCCCAGCCGCCATACTGCCAATAGTCGCCAATTGATTACGGCAACGGCGAAT
AGCGTTTCTTGGTTGAGTTTAACTGTTCTCGCGACGGCAGCGGGCCAACCCCAGGACGAAACGGGCATGGTGGAATTTGT
CGCCGTTTACCAGAAAGGAAAAACCGTGGGGCAACTCCACGAGCGATCGCAATTCATTAAAGAAAAAGGCCGCTGGTTTT
ACCTCGAAGGGGACATTCTGCCGCCCCTACAACCGAAGAAAAATGAACCCTGCTGGTGTAACAGTGGCAAAAAATTTAAA
CAATGCCACGGCAAGAAACGCTAA

Upstream 100 bases:

>100_bases
TGGCGTTGAATTTCGGGAGGCAACAGGGCTGGCTTACACCATTTAAATAAACTTTTAGAATTCGGTAGCTCGGTAAAATA
AGACCGTTCTTTCCCATTGT

Downstream 100 bases:

>100_bases
AGGGGCAAGCTTAGTTGAGGATCTTGCAACTGTTCAATGATTTTCAAATGGGCTTTTGAGAAAGGATAATTCTTGAGGCT
TTGGAGCGAGACCCAGCCTG

Product: SecC motif-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MPVLISGDRPSRLCPCGSQKPLAQCCAPYLQGQLAAPTAEALMQSRYTAYCFRDVDYLLKTEHPSRHTANSRQLITATAN
SVSWLSLTVLATAAGQPQDETGMVEFVAVYQKGKTVGQLHERSQFIKEKGRWFYLEGDILPPLQPKKNEPCWCNSGKKFK
QCHGKKR

Sequences:

>Translated_167_residues
MPVLISGDRPSRLCPCGSQKPLAQCCAPYLQGQLAAPTAEALMQSRYTAYCFRDVDYLLKTEHPSRHTANSRQLITATAN
SVSWLSLTVLATAAGQPQDETGMVEFVAVYQKGKTVGQLHERSQFIKEKGRWFYLEGDILPPLQPKKNEPCWCNSGKKFK
QCHGKKR
>Mature_166_residues
PVLISGDRPSRLCPCGSQKPLAQCCAPYLQGQLAAPTAEALMQSRYTAYCFRDVDYLLKTEHPSRHTANSRQLITATANS
VSWLSLTVLATAAGQPQDETGMVEFVAVYQKGKTVGQLHERSQFIKEKGRWFYLEGDILPPLQPKKNEPCWCNSGKKFKQ
CHGKKR

Specific function: Unknown

COG id: COG3012

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0225 family [H]

Homologues:

Organism=Escherichia coli, GI1787484, Length=155, Percent_Identity=45.8064516129032, Blast_Score=134, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004027
- InterPro:   IPR023006 [H]

Pfam domain/function: PF02810 SEC-C [H]

EC number: NA

Molecular weight: Translated: 18675; Mature: 18543

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVLISGDRPSRLCPCGSQKPLAQCCAPYLQGQLAAPTAEALMQSRYTAYCFRDVDYLLK
CCEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH
TEHPSRHTANSRQLITATANSVSWLSLTVLATAAGQPQDETGMVEFVAVYQKGKTVGQLH
CCCCCCCCCCCCEEEEEECCCCHHHHHEEHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHH
ERSQFIKEKGRWFYLEGDILPPLQPKKNEPCWCNSGKKFKQCHGKKR
HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
>Mature Secondary Structure 
PVLISGDRPSRLCPCGSQKPLAQCCAPYLQGQLAAPTAEALMQSRYTAYCFRDVDYLLK
CEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH
TEHPSRHTANSRQLITATANSVSWLSLTVLATAAGQPQDETGMVEFVAVYQKGKTVGQLH
CCCCCCCCCCCCEEEEEECCCCHHHHHEEHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHH
ERSQFIKEKGRWFYLEGDILPPLQPKKNEPCWCNSGKKFKQCHGKKR
HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA