Click here to switch to the map view.

The map label for this gene is ybiX [C]

Identifier: 170079252

GI number: 170079252

Start: 2790864

End: 2791523

Strand: Reverse

Name: ybiX [C]

Synonym: SYNPCC7002_A2658

Alternate gene names: 170079252

Gene position: 2791523-2790864 (Counterclockwise)

Preceding gene: 170079253

Following gene: 170079251

Centisome position: 92.8

GC content: 51.52

Gene sequence:

>660_bases
ATGTTCTTTAAAATTCCCCAGGTGTTGACACCAGAGGCCCTCGAAAAAATAACCACAACCTTGACCGAAGCCGAATTTGT
CGATGGCAAACTTACGGCAGGTTGGTATGCCAAACTGGTCAAAGAAAATCAACAATTGGCCAAGGCAACCCCCACGGCCC
AAGCTCTAGAAGAGCAAGTGCGCCAAGCCCTCCAGAGCAATGCTCTCTTTCAAACGGCGATCCGTCCCAAAACTGTCCAC
ACCCTGCTGTTTAGCCGTTACGGCCCCGGCATGGCCTATGGTCGCCACACCGACAATGCCCTGATGAATGGGATGCGCTC
GGACGTTTCATTTACCCTGTTTCTCAATGAACCTAGTGACTATGAAGGGGGCGAACTTGTCATTGAAGGGGCAGATTCTG
AACAAAGCTATAAACTGCCTGCTGGAACGGCGATCGCCTATCCTTCTACTTCGTTGCACCGGGTGAATGTGGTGACAAAA
GGGACACGCTTGGTGGCGGTGGGTTGGGTGCAAAGTTGGATCCGGGATGCCCAAAAGCGGGAAATTGTATTTGATCTCGA
TGTCAGTCGCCGTAGCCTGTTTGCCCAGAGCGGTAAAACCACAGAATTTGATCTCCTCTCGAAAAGTGTGGCGAATCTCC
TACGGCTCTGGAGTGAGTAA

Upstream 100 bases:

>100_bases
GATTGAAGCCGCCAGCAACAGCTAATCCCCAGCTTCTGTGAATATCATTACAGTGGCCCCGGTTTTGCTGGGGCTTTTTT
AAGATTTTTTGGTAAGGCAA

Downstream 100 bases:

>100_bases
ACAAACTCACCTAAGACTTTATTGAAAATAAGTATCAATACTATTGACGAACTTCCCAAGTATCGATACACTTTATCTAG
TTTAAATAAGAATTATTTTC

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MFFKIPQVLTPEALEKITTTLTEAEFVDGKLTAGWYAKLVKENQQLAKATPTAQALEEQVRQALQSNALFQTAIRPKTVH
TLLFSRYGPGMAYGRHTDNALMNGMRSDVSFTLFLNEPSDYEGGELVIEGADSEQSYKLPAGTAIAYPSTSLHRVNVVTK
GTRLVAVGWVQSWIRDAQKREIVFDLDVSRRSLFAQSGKTTEFDLLSKSVANLLRLWSE

Sequences:

>Translated_219_residues
MFFKIPQVLTPEALEKITTTLTEAEFVDGKLTAGWYAKLVKENQQLAKATPTAQALEEQVRQALQSNALFQTAIRPKTVH
TLLFSRYGPGMAYGRHTDNALMNGMRSDVSFTLFLNEPSDYEGGELVIEGADSEQSYKLPAGTAIAYPSTSLHRVNVVTK
GTRLVAVGWVQSWIRDAQKREIVFDLDVSRRSLFAQSGKTTEFDLLSKSVANLLRLWSE
>Mature_219_residues
MFFKIPQVLTPEALEKITTTLTEAEFVDGKLTAGWYAKLVKENQQLAKATPTAQALEEQVRQALQSNALFQTAIRPKTVH
TLLFSRYGPGMAYGRHTDNALMNGMRSDVSFTLFLNEPSDYEGGELVIEGADSEQSYKLPAGTAIAYPSTSLHRVNVVTK
GTRLVAVGWVQSWIRDAQKREIVFDLDVSRRSLFAQSGKTTEFDLLSKSVANLLRLWSE

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=224, Percent_Identity=42.4107142857143, Blast_Score=175, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2658_SYNP2 (B1XLW1)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001735890.1
- ProteinModelPortal:   B1XLW1
- GeneID:   6056278
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A2658
- HOGENOM:   HBG285605
- OMA:   NLIRYWA
- ProtClustDB:   PRK05467
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 24404; Mature: 24404

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 163-163

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFKIPQVLTPEALEKITTTLTEAEFVDGKLTAGWYAKLVKENQQLAKATPTAQALEEQV
CCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RQALQSNALFQTAIRPKTVHTLLFSRYGPGMAYGRHTDNALMNGMRSDVSFTLFLNEPSD
HHHHHHCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCC
YEGGELVIEGADSEQSYKLPAGTAIAYPSTSLHRVNVVTKGTRLVAVGWVQSWIRDAQKR
CCCCEEEEECCCCCCCEECCCCCEEECCCCCCEEEEEEECCCEEEEHHHHHHHHHHHHHC
EIVFDLDVSRRSLFAQSGKTTEFDLLSKSVANLLRLWSE
EEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFFKIPQVLTPEALEKITTTLTEAEFVDGKLTAGWYAKLVKENQQLAKATPTAQALEEQV
CCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RQALQSNALFQTAIRPKTVHTLLFSRYGPGMAYGRHTDNALMNGMRSDVSFTLFLNEPSD
HHHHHHCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCC
YEGGELVIEGADSEQSYKLPAGTAIAYPSTSLHRVNVVTKGTRLVAVGWVQSWIRDAQKR
CCCCEEEEECCCCCCCEECCCCCEEECCCCCCEEEEEEECCCEEEEHHHHHHHHHHHHHC
EIVFDLDVSRRSLFAQSGKTTEFDLLSKSVANLLRLWSE
EEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA