| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170079253
Identifier: 170079253
GI number: 170079253
Start: 2791599
End: 2792423
Strand: Reverse
Name: 170079253
Synonym: SYNPCC7002_A2659
Alternate gene names: NA
Gene position: 2792423-2791599 (Counterclockwise)
Preceding gene: 170079254
Following gene: 170079252
Centisome position: 92.83
GC content: 52.85
Gene sequence:
>825_bases ATGAAATCTATGAAGCCCGTTGAATTGTTCTTAACCCTGAGTTTAGCTGTTAGCCTTGGGGCTTGCGGTACTTCTGTCCC AGACAACGGTGGGGAGGGGGGGGGAAATGCTGCCACGACGGAAGCCGTAGAACAGAATAGTGCTAACCATGGCGGCGAAG GCGGAGAGGGTGGTGAAGGGGGCGAAGGTGCCAGTTCCAGCAATCCCGATGAAGACTATGCCACGACCCTCTCGTTGATG TTGGGTCATTTGATGGTGGCCGAAGAACTGATTGCGGTGGGGGAATATGAACAGGCAGAACCGCATATTGGCCACCCTGT AGAAGAATTGTATGGTGCCATTGAGAGTCAATTGGGCGATCGCGGCGTGGCCGATTTTAAAAATGTCCTCAATAGTGCCC ATGATTTGATTAAGACAGCACCGGAATCCCCCGAATTACAAACCCAACTCGATGCTTCCATTGAGGCCATCGATACAGCC CTTGCGGCTTTGGGCGAAGCAGAATTGCAGTCCCCTGAGTTTGTCCTTGGTGTCATGAATAATCTCCTCCAGGTGGCCGG GGAAGAATACGCGGCGGCGATCGCCAATAATCAGATCGTCGAAGCGGTGGAATACCAAGATTCCCGTGGTTTCGTTTTCC ATAGCGAGATGCTTTATGAACAGATTGCGGATCAACTCAGCCCGGAGACCAGAGAGGCGATCGCCACGGCTTTAGCCGAT CTCAAAACCGCTTGGCCCACGGTGGAACCGCCTCAAACCCCCGTAAAAACGCCCCAGGAAGTATTGAGTCGTATTGTTGA GATTGAAGCCGCCAGCAACAGCTAA
Upstream 100 bases:
>100_bases TTTTGAAGTGCTCCCAGCCGGAGCCTAGATCTTTATTGACAAAACTTACTAAAAACCTTAGCGTATTGCAATATTAGCTT GAAAATTATTCTTAATTAGT
Downstream 100 bases:
>100_bases TCCCCAGCTTCTGTGAATATCATTACAGTGGCCCCGGTTTTGCTGGGGCTTTTTTAAGATTTTTTGGTAAGGCAAATGTT CTTTAAAATTCCCCAGGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MKSMKPVELFLTLSLAVSLGACGTSVPDNGGEGGGNAATTEAVEQNSANHGGEGGEGGEGGEGASSSNPDEDYATTLSLM LGHLMVAEELIAVGEYEQAEPHIGHPVEELYGAIESQLGDRGVADFKNVLNSAHDLIKTAPESPELQTQLDASIEAIDTA LAALGEAELQSPEFVLGVMNNLLQVAGEEYAAAIANNQIVEAVEYQDSRGFVFHSEMLYEQIADQLSPETREAIATALAD LKTAWPTVEPPQTPVKTPQEVLSRIVEIEAASNS
Sequences:
>Translated_274_residues MKSMKPVELFLTLSLAVSLGACGTSVPDNGGEGGGNAATTEAVEQNSANHGGEGGEGGEGGEGASSSNPDEDYATTLSLM LGHLMVAEELIAVGEYEQAEPHIGHPVEELYGAIESQLGDRGVADFKNVLNSAHDLIKTAPESPELQTQLDASIEAIDTA LAALGEAELQSPEFVLGVMNNLLQVAGEEYAAAIANNQIVEAVEYQDSRGFVFHSEMLYEQIADQLSPETREAIATALAD LKTAWPTVEPPQTPVKTPQEVLSRIVEIEAASNS >Mature_274_residues MKSMKPVELFLTLSLAVSLGACGTSVPDNGGEGGGNAATTEAVEQNSANHGGEGGEGGEGGEGASSSNPDEDYATTLSLM LGHLMVAEELIAVGEYEQAEPHIGHPVEELYGAIESQLGDRGVADFKNVLNSAHDLIKTAPESPELQTQLDASIEAIDTA LAALGEAELQSPEFVLGVMNNLLQVAGEEYAAAIANNQIVEAVEYQDSRGFVFHSEMLYEQIADQLSPETREAIATALAD LKTAWPTVEPPQTPVKTPQEVLSRIVEIEAASNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28732; Mature: 28732
Theoretical pI: Translated: 3.79; Mature: 3.79
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSMKPVELFLTLSLAVSLGACGTSVPDNGGEGGGNAATTEAVEQNSANHGGEGGEGGEG CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC GEGASSSNPDEDYATTLSLMLGHLMVAEELIAVGEYEQAEPHIGHPVEELYGAIESQLGD CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC RGVADFKNVLNSAHDLIKTAPESPELQTQLDASIEAIDTALAALGEAELQSPEFVLGVMN CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH NLLQVAGEEYAAAIANNQIVEAVEYQDSRGFVFHSEMLYEQIADQLSPETREAIATALAD HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHH LKTAWPTVEPPQTPVKTPQEVLSRIVEIEAASNS HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKSMKPVELFLTLSLAVSLGACGTSVPDNGGEGGGNAATTEAVEQNSANHGGEGGEGGEG CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC GEGASSSNPDEDYATTLSLMLGHLMVAEELIAVGEYEQAEPHIGHPVEELYGAIESQLGD CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC RGVADFKNVLNSAHDLIKTAPESPELQTQLDASIEAIDTALAALGEAELQSPEFVLGVMN CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH NLLQVAGEEYAAAIANNQIVEAVEYQDSRGFVFHSEMLYEQIADQLSPETREAIATALAD HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHH LKTAWPTVEPPQTPVKTPQEVLSRIVEIEAASNS HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA