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The map label for this gene is rnhB [H]

Identifier: 170079067

GI number: 170079067

Start: 2576400

End: 2577002

Strand: Direct

Name: rnhB [H]

Synonym: SYNPCC7002_A2472

Alternate gene names: 170079067

Gene position: 2576400-2577002 (Clockwise)

Preceding gene: 170079066

Following gene: 170079068

Centisome position: 85.65

GC content: 50.58

Gene sequence:

>603_bases
ATGGTTTTACTGGCGGGCGTTGATGAAGTGGGCCGGGGCTGTTTGTTTGGGCCGGTGGTGGCCGCGGTGGTGGTGGTTAA
TACAATCCAAGAACAAGCCCTGGGGGAGCTGGGTGTTACTGATAGTAAAAAGCTGTCGGCCAAACGGCGAGAAACCCTCG
TACCCCAAATTCAGGCTCTGGTAACGGACTGGGCGATCGCCTCGGCGTCGGTGGCCGAAATTGACCAGCTTAATATTTTG
CAGGCGACGTTTCTCGCGATGACCCGTGCTGTTGAAAAATTACAGATTAAACCCACGGAAATTTTTGTTGATGGCCGCCA
AACTATTCCTAAACTGAATTACCCCCAACAGGCGATTATTCAAGGGGACAGCAAAGTAAAGGCGATCGCTGCCGCCAGTA
TCCTCGCTAAAGTGCAACGGGATCAAGACATTATTCAATTGGCAGAGCATTATCCTGAATATGATTTAGCCAATAACAAA
GGCTATGGCACCCAAAAACATCGCCAAGCCATTTGGCAATACGGACTGACGCCCCACCACCGCCAAAGTTTTAAAATTCA
GCCGCCGCCTCAACAGCTCGAACTCTTGCCGGAGCAGAAATAA

Upstream 100 bases:

>100_bases
TTTCCCCCAAGCAGAAACGGCTCCCTGTTTTACACCGCTACGCTCCTTAGCTTCTTGGGAAAATCTCCAACAGTTAGCTC
AGCCCACCCAAGCCTAGACC

Downstream 100 bases:

>100_bases
AGCCGATACAGTGGGAGGCTAAACCCCACCCCGTTTGGTCTGCCCCCCATGAAGCTTGCGACGACCCTAGAGGCAATTCT
CTACATCAAAGCCCAACCCC

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MVLLAGVDEVGRGCLFGPVVAAVVVVNTIQEQALGELGVTDSKKLSAKRRETLVPQIQALVTDWAIASASVAEIDQLNIL
QATFLAMTRAVEKLQIKPTEIFVDGRQTIPKLNYPQQAIIQGDSKVKAIAAASILAKVQRDQDIIQLAEHYPEYDLANNK
GYGTQKHRQAIWQYGLTPHHRQSFKIQPPPQQLELLPEQK

Sequences:

>Translated_200_residues
MVLLAGVDEVGRGCLFGPVVAAVVVVNTIQEQALGELGVTDSKKLSAKRRETLVPQIQALVTDWAIASASVAEIDQLNIL
QATFLAMTRAVEKLQIKPTEIFVDGRQTIPKLNYPQQAIIQGDSKVKAIAAASILAKVQRDQDIIQLAEHYPEYDLANNK
GYGTQKHRQAIWQYGLTPHHRQSFKIQPPPQQLELLPEQK
>Mature_200_residues
MVLLAGVDEVGRGCLFGPVVAAVVVVNTIQEQALGELGVTDSKKLSAKRRETLVPQIQALVTDWAIASASVAEIDQLNIL
QATFLAMTRAVEKLQIKPTEIFVDGRQTIPKLNYPQQAIIQGDSKVKAIAAASILAKVQRDQDIIQLAEHYPEYDLANNK
GYGTQKHRQAIWQYGLTPHHRQSFKIQPPPQQLELLPEQK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=182, Percent_Identity=47.8021978021978, Blast_Score=162, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 22110; Mature: 22110

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLLAGVDEVGRGCLFGPVVAAVVVVNTIQEQALGELGVTDSKKLSAKRRETLVPQIQAL
CEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
VTDWAIASASVAEIDQLNILQATFLAMTRAVEKLQIKPTEIFVDGRQTIPKLNYPQQAII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCHHHHH
QGDSKVKAIAAASILAKVQRDQDIIQLAEHYPEYDLANNKGYGTQKHRQAIWQYGLTPHH
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
RQSFKIQPPPQQLELLPEQK
CCCCCCCCCHHHHHCCCCCC
>Mature Secondary Structure
MVLLAGVDEVGRGCLFGPVVAAVVVVNTIQEQALGELGVTDSKKLSAKRRETLVPQIQAL
CEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
VTDWAIASASVAEIDQLNILQATFLAMTRAVEKLQIKPTEIFVDGRQTIPKLNYPQQAII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCHHHHH
QGDSKVKAIAAASILAKVQRDQDIIQLAEHYPEYDLANNKGYGTQKHRQAIWQYGLTPHH
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
RQSFKIQPPPQQLELLPEQK
CCCCCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA