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The map label for this gene is gidA

Identifier: 170078989

GI number: 170078989

Start: 2478857

End: 2480227

Strand: Reverse

Name: gidA

Synonym: SYNPCC7002_A2394

Alternate gene names: 170078989

Gene position: 2480227-2478857 (Counterclockwise)

Preceding gene: 170078990

Following gene: 170078987

Centisome position: 82.45

GC content: 54.56

Gene sequence:

>1371_bases
ATGACTAAGACCCTGCCTCCTGTAACTGTAATTGGTGGTGGCCTCGCTGGCACAGAAGCCGCCTGGCAAATTGCCCAAGC
CGGGGTTCCGGTCACGCTCTATGAAATGCGCCCCGTCCAAAAAAGTCCAGCCCACCATACCGCCGACCTCGCTGAATTGG
TTTGTAGTAATTCTTTTGGGGCCGCTTCCAGCGATCGCGCCGCCGGATTGCTTCACGAGGAACTTCGTCGCCTCCAATCC
GTGATCATCAGCACCGCCGACCAACACCGCGTCCCTGCGGGGGGAGCCTTAGCCGTTGACCGGGGCGTTTTTAGTCAAGA
TCTCACCCAAAAGCTTGCCGAACATCCCCTCGTCACCTTTCGCCGGGAACCCCTAGACCAAATCCCCAGCGAAGGAATTA
CCGTTTTAGCGACTGGGCCTCTGACCACCGCTGCCCTGGCCACAGAACTGCAACAATTCACGGGCCTGGAATACATGAGC
TTCTTTGATGCCGCCAGTCCGATTATTGTTGGTGAAAGCATCAACCAAGACATTGCCTTTCTCGCCTCTCGCTACGACAA
GGGAGAAGCTGCCTATCTCAATTGCCCGATGGATCCAGCCCAGTACCAGGCGTTTCGGGCGGCCCTTTGTGAAGCAGAGC
AAGCAGAACTGAAAGATTTTGAACTGGAGACCGCGAAGTTTTTTGAGGGCTGTCTTCCCATCGAAGAATTAGCCCGCCGT
GGTGAAGATACCATGCGTTTTGGCCCCCTAAAACCCGTAGGTCTTTTTGATGCTCGCCTCGGGGATTTTCGCGCCCCCGA
AAATAAAGGCAAACGTCCCTATGCAGTGGTGCAATTGCGCCAGGAAGATAAACAAGGTCAACTCTGGAATATGGTGGGTT
TCCAAACCAATCTCCGTTGGGGCGAACAAAAGCGGGTGTTCCGGATGATCCCTGGGTTAGAAAATGCTGAATTTGTCCGT
ATGGGCGTGATGCACCGCAATACGTTTTTAAATTCCCCTGAGTTGCTCGAAGCAACGCTTCAATTTAAAAAACGCCCGAC
CCTCCTCGCCGCTGGCCAGTTGATTGGCACCGAAGGTTATACAGCAGCCGCAGCAGGGGGATGGCTCGCCGGAACCAATG
CCGCGCGGTTAGCCCAAGGATTAACACCTTTGACCTTGCCGGAAACCACAATGATGGGCGCTCTCTTCGAGTTTATCCAC
AGTGCTTCTCCCAAGCATTTTCAACCGATGCCCCCCAATTTCGGGATTATTCCGCCCCTAGCAGAACGCGTACGGAGCAA
GAAAGAACGGTATGGCGTTTATCGCGATCGCTCCCTCACTGACCTGGAGCAATGGCGGGAAGAGTCTTGTCGTCCAGCCG
CCTTAGTCTAA

Upstream 100 bases:

>100_bases
CCTCCGGGGTGGTTTTATTTTGTCTTCCCCCATCGTTAAACCCCAAAGCCAAAATGTAAGATAGAATACCGCTCCTAACT
CTATTTGACCTTGACCGCCC

Downstream 100 bases:

>100_bases
TAATTTCGTAACATCCCCCAGGTTCACCAAGATTTTTGACTCAGCAAGCGTACTTTGATGGTGCGCTTTTTTTGTGAGTA
GAGAAGTCGGCGATCGCCAA

Product: tRNA (uracil-5-)-methyltransferase Gid

Products: NA

Alternate protein names: Folate-dependent tRNA (uracil-5-)-methyltransferase; Folate-dependent tRNA(M-5-U54)-methyltransferase

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MTKTLPPVTVIGGGLAGTEAAWQIAQAGVPVTLYEMRPVQKSPAHHTADLAELVCSNSFGAASSDRAAGLLHEELRRLQS
VIISTADQHRVPAGGALAVDRGVFSQDLTQKLAEHPLVTFRREPLDQIPSEGITVLATGPLTTAALATELQQFTGLEYMS
FFDAASPIIVGESINQDIAFLASRYDKGEAAYLNCPMDPAQYQAFRAALCEAEQAELKDFELETAKFFEGCLPIEELARR
GEDTMRFGPLKPVGLFDARLGDFRAPENKGKRPYAVVQLRQEDKQGQLWNMVGFQTNLRWGEQKRVFRMIPGLENAEFVR
MGVMHRNTFLNSPELLEATLQFKKRPTLLAAGQLIGTEGYTAAAAGGWLAGTNAARLAQGLTPLTLPETTMMGALFEFIH
SASPKHFQPMPPNFGIIPPLAERVRSKKERYGVYRDRSLTDLEQWREESCRPAALV

Sequences:

>Translated_456_residues
MTKTLPPVTVIGGGLAGTEAAWQIAQAGVPVTLYEMRPVQKSPAHHTADLAELVCSNSFGAASSDRAAGLLHEELRRLQS
VIISTADQHRVPAGGALAVDRGVFSQDLTQKLAEHPLVTFRREPLDQIPSEGITVLATGPLTTAALATELQQFTGLEYMS
FFDAASPIIVGESINQDIAFLASRYDKGEAAYLNCPMDPAQYQAFRAALCEAEQAELKDFELETAKFFEGCLPIEELARR
GEDTMRFGPLKPVGLFDARLGDFRAPENKGKRPYAVVQLRQEDKQGQLWNMVGFQTNLRWGEQKRVFRMIPGLENAEFVR
MGVMHRNTFLNSPELLEATLQFKKRPTLLAAGQLIGTEGYTAAAAGGWLAGTNAARLAQGLTPLTLPETTMMGALFEFIH
SASPKHFQPMPPNFGIIPPLAERVRSKKERYGVYRDRSLTDLEQWREESCRPAALV
>Mature_455_residues
TKTLPPVTVIGGGLAGTEAAWQIAQAGVPVTLYEMRPVQKSPAHHTADLAELVCSNSFGAASSDRAAGLLHEELRRLQSV
IISTADQHRVPAGGALAVDRGVFSQDLTQKLAEHPLVTFRREPLDQIPSEGITVLATGPLTTAALATELQQFTGLEYMSF
FDAASPIIVGESINQDIAFLASRYDKGEAAYLNCPMDPAQYQAFRAALCEAEQAELKDFELETAKFFEGCLPIEELARRG
EDTMRFGPLKPVGLFDARLGDFRAPENKGKRPYAVVQLRQEDKQGQLWNMVGFQTNLRWGEQKRVFRMIPGLENAEFVRM
GVMHRNTFLNSPELLEATLQFKKRPTLLAAGQLIGTEGYTAAAAGGWLAGTNAARLAQGLTPLTLPETTMMGALFEFIHS
ASPKHFQPMPPNFGIIPPLAERVRSKKERYGVYRDRSLTDLEQWREESCRPAALV

Specific function: Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs

COG id: COG1206

COG function: function code J; NAD(FAD)-utilizing enzyme possibly involved in translation

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MnmG family. TrmFO subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRMFO_SYNP2 (B1XK17)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001735627.1
- ProteinModelPortal:   B1XK17
- SMR:   B1XK17
- GeneID:   6057201
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A2394
- HOGENOM:   HBG285041
- OMA:   FEGCLPI
- ProtClustDB:   PRK05335
- GO:   GO:0005737
- HAMAP:   MF_01037
- InterPro:   IPR004417
- InterPro:   IPR002218
- InterPro:   IPR020595
- TIGRFAMs:   TIGR00137

Pfam domain/function: PF01134 GIDA

EC number: =2.1.1.74

Molecular weight: Translated: 50158; Mature: 50027

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS01280 GIDA_1; PS01281 GIDA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTLPPVTVIGGGLAGTEAAWQIAQAGVPVTLYEMRPVQKSPAHHTADLAELVCSNSFG
CCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCC
AASSDRAAGLLHEELRRLQSVIISTADQHRVPAGGALAVDRGVFSQDLTQKLAEHPLVTF
CCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCHHH
RREPLDQIPSEGITVLATGPLTTAALATELQQFTGLEYMSFFDAASPIIVGESINQDIAF
CCCCHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCHHHHHHHHCCCCEEECCCCCHHHHH
LASRYDKGEAAYLNCPMDPAQYQAFRAALCEAEQAELKDFELETAKFFEGCLPIEELARR
HHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC
GEDTMRFGPLKPVGLFDARLGDFRAPENKGKRPYAVVQLRQEDKQGQLWNMVGFQTNLRW
CCCCEEECCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEHHHCCCCCCCC
GEQKRVFRMIPGLENAEFVRMGVMHRNTFLNSPELLEATLQFKKRPTLLAAGQLIGTEGY
CHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCEECCCCC
TAAAAGGWLAGTNAARLAQGLTPLTLPETTMMGALFEFIHSASPKHFQPMPPNFGIIPPL
CHHCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
AERVRSKKERYGVYRDRSLTDLEQWREESCRPAALV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TKTLPPVTVIGGGLAGTEAAWQIAQAGVPVTLYEMRPVQKSPAHHTADLAELVCSNSFG
CCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCC
AASSDRAAGLLHEELRRLQSVIISTADQHRVPAGGALAVDRGVFSQDLTQKLAEHPLVTF
CCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCHHH
RREPLDQIPSEGITVLATGPLTTAALATELQQFTGLEYMSFFDAASPIIVGESINQDIAF
CCCCHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCHHHHHHHHCCCCEEECCCCCHHHHH
LASRYDKGEAAYLNCPMDPAQYQAFRAALCEAEQAELKDFELETAKFFEGCLPIEELARR
HHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC
GEDTMRFGPLKPVGLFDARLGDFRAPENKGKRPYAVVQLRQEDKQGQLWNMVGFQTNLRW
CCCCEEECCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEHHHCCCCCCCC
GEQKRVFRMIPGLENAEFVRMGVMHRNTFLNSPELLEATLQFKKRPTLLAAGQLIGTEGY
CHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCEECCCCC
TAAAAGGWLAGTNAARLAQGLTPLTLPETTMMGALFEFIHSASPKHFQPMPPNFGIIPPL
CHHCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
AERVRSKKERYGVYRDRSLTDLEQWREESCRPAALV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA