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The map label for this gene is petJ

Identifier: 170078986

GI number: 170078986

Start: 2471448

End: 2471795

Strand: Reverse

Name: petJ

Synonym: SYNPCC7002_A2391

Alternate gene names: NA

Gene position: 2471795-2471448 (Counterclockwise)

Preceding gene: 170078987

Following gene: 170078983

Centisome position: 82.17

GC content: 52.01

Gene sequence:

>348_bases
ATGAATAAACGCCTTGTCCAAGTCATTGTCTTTGTGATGATCGTTCTGTTGCTGGTGCCCCTCCTGGCAACCCCTGCCTT
TGGTGCTGATCTCGACCAGGGAGCCCAGATCTTTGAGGCCCATTGTGCCGGCTGTCATCTCAACGGTGGCAATATCGTCC
GGCGCGGCAAAAATCTCAAAAAACGGGCCATGGCGAAAAATGGCTATACCTCCGTAGAGGCGATCGCCAATCTTGTTACC
CAGGGGAAAGGCAATATGTCCGCCTACGGTGACAAACTCAGCTCTGAAGAAATCCAGGCCGTCTCCCAATACGTTCTCCA
GCAATCCCAAACCGACTGGAAATCTTAA

Upstream 100 bases:

>100_bases
TTAAGCGATCGCCACCCCACTACCGCCGGACGGGTTAACAACGGTATCGGCTTGTTTTTAGAATAGAACCGACGCACACT
AATCCCTGCCCGAATTACCG

Downstream 100 bases:

>100_bases
AAATCAAAGTAAATGTAAGGAATATTCCCCTCTGGCCCAAAAATCAAAATACCGTAGAAACAGAGGGGAATTAGCGCCAC
TTTAAGACCCCAATTCAGTT

Product: cytochrome c6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MNKRLVQVIVFVMIVLLLVPLLATPAFGADLDQGAQIFEAHCAGCHLNGGNIVRRGKNLKKRAMAKNGYTSVEAIANLVT
QGKGNMSAYGDKLSSEEIQAVSQYVLQQSQTDWKS

Sequences:

>Translated_115_residues
MNKRLVQVIVFVMIVLLLVPLLATPAFGADLDQGAQIFEAHCAGCHLNGGNIVRRGKNLKKRAMAKNGYTSVEAIANLVT
QGKGNMSAYGDKLSSEEIQAVSQYVLQQSQTDWKS
>Mature_115_residues
MNKRLVQVIVFVMIVLLLVPLLATPAFGADLDQGAQIFEAHCAGCHLNGGNIVRRGKNLKKRAMAKNGYTSVEAIANLVT
QGKGNMSAYGDKLSSEEIQAVSQYVLQQSQTDWKS

Specific function: Unknown

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cellular thylakoid lumen (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PetJ subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 12479; Mature: 12479

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKRLVQVIVFVMIVLLLVPLLATPAFGADLDQGAQIFEAHCAGCHLNGGNIVRRGKNLK
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHH
KRAMAKNGYTSVEAIANLVTQGKGNMSAYGDKLSSEEIQAVSQYVLQQSQTDWKS
HHHHHCCCCHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNKRLVQVIVFVMIVLLLVPLLATPAFGADLDQGAQIFEAHCAGCHLNGGNIVRRGKNLK
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHH
KRAMAKNGYTSVEAIANLVTQGKGNMSAYGDKLSSEEIQAVSQYVLQQSQTDWKS
HHHHHCCCCHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]