Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

Click here to switch to the map view.

The map label for this gene is 170078971

Identifier: 170078971

GI number: 170078971

Start: 2459450

End: 2459839

Strand: Direct

Name: 170078971

Synonym: SYNPCC7002_A2376

Alternate gene names: NA

Gene position: 2459450-2459839 (Clockwise)

Preceding gene: 170078970

Following gene: 170078972

Centisome position: 81.76

GC content: 42.82

Gene sequence:

>390_bases
ATGATCGGCATTCTCGATATTTTTCTAATTTTAATGATCTGGTTTCTGCTCACAGCAGACCTGAGTGCAGCCAATATTCT
CATCGGCGTGATCATTGCAATCTTGATGCCCGGTAAACGCTTTGATGGGGCTCAGATTAAAGATTGGCTCCATGTGTTTT
GGGAAATTATCATTGCGATTCCCCAGGCCTATTTTGAAGCCTTTGAAATGATTTTTCGCCCCCATCTCTATGAAACCGTC
ACCATGGAGCGGGTAAAGCCAAATCGGACTCCAGGCTTAATTTTTCTCGATATTTTTCTGATTACCTTTACCCCGAAAAC
AATTGTGCTGCATTATCACAAAGACGGTTGGTACGAAGTTCACCGTGTGCAAAGGAGGAAACTCAAATGA

Upstream 100 bases:

>100_bases
AGCGCATCGAGTTCAAGCTGCCCCGAATCTTCGAGGCGTTTGAGCAGTTGATCGGCGCCATGAGCGTTGTCTTAACTGGA
TTATTTTGGATGGTGACCCT

Downstream 100 bases:

>100_bases
CCTGGATTTTTGGGGCGATGATCGGCGCGTTACTACTCCCGATTTATGAAGCAATACAGGATCAAGATATTTGGCAAAAG
CTCCTGGCCTTCGCCAGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MIGILDIFLILMIWFLLTADLSAANILIGVIIAILMPGKRFDGAQIKDWLHVFWEIIIAIPQAYFEAFEMIFRPHLYETV
TMERVKPNRTPGLIFLDIFLITFTPKTIVLHYHKDGWYEVHRVQRRKLK

Sequences:

>Translated_129_residues
MIGILDIFLILMIWFLLTADLSAANILIGVIIAILMPGKRFDGAQIKDWLHVFWEIIIAIPQAYFEAFEMIFRPHLYETV
TMERVKPNRTPGLIFLDIFLITFTPKTIVLHYHKDGWYEVHRVQRRKLK
>Mature_129_residues
MIGILDIFLILMIWFLLTADLSAANILIGVIIAILMPGKRFDGAQIKDWLHVFWEIIIAIPQAYFEAFEMIFRPHLYETV
TMERVKPNRTPGLIFLDIFLITFTPKTIVLHYHKDGWYEVHRVQRRKLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15241; Mature: 15241

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGILDIFLILMIWFLLTADLSAANILIGVIIAILMPGKRFDGAQIKDWLHVFWEIIIAI
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
PQAYFEAFEMIFRPHLYETVTMERVKPNRTPGLIFLDIFLITFTPKTIVLHYHKDGWYEV
HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHH
HRVQRRKLK
HHHHHHCCC
>Mature Secondary Structure
MIGILDIFLILMIWFLLTADLSAANILIGVIIAILMPGKRFDGAQIKDWLHVFWEIIIAI
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
PQAYFEAFEMIFRPHLYETVTMERVKPNRTPGLIFLDIFLITFTPKTIVLHYHKDGWYEV
HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHH
HRVQRRKLK
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA