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The map label for this gene is clpB1 [H]

Identifier: 170078948

GI number: 170078948

Start: 2432148

End: 2434742

Strand: Reverse

Name: clpB1 [H]

Synonym: SYNPCC7002_A2353

Alternate gene names: 170078948

Gene position: 2434742-2432148 (Counterclockwise)

Preceding gene: 170078949

Following gene: 170078946

Centisome position: 80.94

GC content: 49.52

Gene sequence:

>2595_bases
ATGCAACCCACTAACCCGAATCAATTTACCGAAAAAGCCTGGCAGGCGATCGCCCAAACGCCGGACATTGCCAAACAAAA
TCAGCAGCAGCAGATCGAATCTGAACATCTGCTACAGGCACTGTTAGAGCAAGACGGCCTCGCGAAAAGTATTTTTACCA
AAGCGGAGATTCCCCTCTCAACATTGCGAGACCGCACCGCAACCTTTATTGCCCAGCAACCGAAAATATCCCAACCGAGC
GAATCGGTTTATTTAGGCCGGAGTTTAGACCTCCTTTTAGACCGCGCCGATCAACACCGAAAATCCTTTGGGGATGACTT
TATTTCCGTTGAACATTTAATCTTGAGCTATGCCAAAGATGACCGTTTTGGCAAAAATCTCTACAAAGAATTTGACCTCA
CAGAAAATAAATTAAAGACGATCATTACGCAAATTCGAGGTAATCAAAAGGTGACCGACCAAAACCCGGAAGGGAAATAC
GAATCCTTAGAAAAATATGGCCGTGATTTAACGAGTCTCGCCCGCAACGGCAAACTAGACCCGGTCATTGGTCGCGATGA
TGAAATTCGCCGCACGATTCAAATTCTCTCCCGCCGCACGAAAAATAATCCGGTTTTGATCGGGGAACCAGGGGTCGGGA
AAACGGCGATCGCCGAAGGATTAGCCCAGCGGATCGTTAACCGTGATGTCCCCGAATCCCTAAAAGATCGCACCCTAATC
GCCTTGGATATGGGGTCGCTCATTGCTGGGGCAAAATATCGTGGTGAATTTGAAGAACGCCTCAAAGCTGTTTTAAAAGA
AGTCACCGATTCCGAAGGGCAGATCATTCTCTTTATTGACGAAATCCACACCGTTGTCGGCGCTGGGGCGACCCAGGGGG
CAATGGATGCCGGGAACCTGCTTAAACCCATGCTCGCCCGGGGTGAACTGCGTTGTATTGGCGCGACGACCCTCGATGAA
TACCGTAAATACATCGAAAAAGATGCGGCCCTAGAACGGCGCTTCCAGTCGGTGATGGTCAACGAACCCAATGTGGTCGA
TACCATCTCGATTCTGCGGGGTCTGAAGGAACGCTACGAAGTGCACCACGGGGTCAAAATCGCCGATACAGCCCTCGTTG
CTGCCGCGATGCTCTCCAACCGTTACATTAGCGATCGCTTTTTACCGGACAAGGCCATTGATCTGGTGGACGAAGCCGCC
GCCAAACTGAAGATGGAGATCACCTCCAAGCCAGAAGAACTGGATGAAATTGACCGGAAAATTCTCCAGTTGGAAATGGA
AAAACTCTCCATCCAAAAGGAAAAAGATGAAGTTTCCCTTGAGCGACTCGCCAAGCTGGAAAAAGAACTGGCCAATTTTA
AGGAAGAGCAGTCCCAACTCAACGCCCAGTGGCAATCGGAAAAAGAATTTATCGACAAAATTCGCTTTCTTAAGGAGGAA
ATCGATAAAACCAACCTAGAAATTCAACAGGCCGAACGCAATTATGACCTCAATAAGGCGGCAGAGTTGCGCTACGGGAA
GTTGACGGAACTGCAACAAAAAATCAAAGATATCGAGAGCAATCTCGCGGCCCAACAGGTAACTGGAGAATCTCTGCTAC
GGGAAGAAGTGATCGAGTCGGATATCGCTGAAATCATTTCAAAATGGACAGGTATCCCGATTAGTAAATTAATCGAATCG
GAAAAAGAAAAGCTGCTCCACCTCGAAGCAGAACTCCACCGTCGGGTTGTCGGCCAAGAAGAAGCCGTTACCGCCGTTGC
CGAAGCGATCCAGCGATCGCGCGCCGGACTCGCCGATCCCAACCGTCCTACGGCGAGCTTTATTTTCCTGGGGCCGACGG
GGGTCGGGAAAACAGAACTCGCCAAAGCCCTCGCCCAATTTCTCTTTGATACCGAAGAAGCCCTCGTGCGGATCGATATG
TCCGAATACATGGAGAAACACGCCGTTTCCCGTTTAATGGGAGCGCCTCCAGGCTATGTGGGCTATGAAGAAGGGGGCCA
GTTAACGGAAGCAATTCGCCGCCGTCCCTACTCGGTGATTCTCTTTGATGAAATTGAAAAGGCCCACGCCGATGTGTTTA
ATGTGATGCTGCAAATCCTGGATGATGGCCGTTTGACCGATTCCCAGGGGCGGACAGTGGACTTTAAAAACACGGTGATC
ATCATGACCAGTAATATCGGTTCCCAATTTATTCTCGATATTGCCGGGGATGATGCCCGTTACGAGGAAATGCGCAATCG
GGTAATGGAGGCGATGAATGCGAACTTCCGGCCGGAATTTCTCAACCGCATCGATGAACTGATTATTTTCCATGGTCTAC
AAAAAGATCAACTGCGTTCTATTGTTCAACTTCAGGTGAATCGCCTCGCCGAACGCCTCGCGGAACAGAAGATCAGCATT
CAACTCACCCCAGAAGCCTATGATTTCATTGCTGAGGTGGGTTATAACCCGGTCTATGGTGCGAGACCCCTCAAGCGGGC
CGTCCAGAAATATGTCGAAACGGCGATCGCCAAAGGGATCCTCAAGGGTGAATTTAAAGCAGGCAGTGCCATTACAGTCG
ATGTGAAAGATGAACGTTTGACTTTTCGTATTTAA

Upstream 100 bases:

>100_bases
TGTCAAATTCTCCAGACAAAAATACAATAAATGGGTAAGTTCTAGGGTTTCTTTTCGGAGAAGCGATGGGACTTTATCTT
AATATTTATTGTTCTGTCCT

Downstream 100 bases:

>100_bases
ACGCCTTTGAAATTCATCTTCATCAACAAACCCTGTGTTAGAGGCTTAGAAGCTAACACAGGGTCTTGAGTTTCTAAATA
TTTATTTATGTCAACTCAAC

Product: endopeptidase Clp ATP-binding chain B1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 864; Mature: 864

Protein sequence:

>864_residues
MQPTNPNQFTEKAWQAIAQTPDIAKQNQQQQIESEHLLQALLEQDGLAKSIFTKAEIPLSTLRDRTATFIAQQPKISQPS
ESVYLGRSLDLLLDRADQHRKSFGDDFISVEHLILSYAKDDRFGKNLYKEFDLTENKLKTIITQIRGNQKVTDQNPEGKY
ESLEKYGRDLTSLARNGKLDPVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVNRDVPESLKDRTLI
ALDMGSLIAGAKYRGEFEERLKAVLKEVTDSEGQIILFIDEIHTVVGAGATQGAMDAGNLLKPMLARGELRCIGATTLDE
YRKYIEKDAALERRFQSVMVNEPNVVDTISILRGLKERYEVHHGVKIADTALVAAAMLSNRYISDRFLPDKAIDLVDEAA
AKLKMEITSKPEELDEIDRKILQLEMEKLSIQKEKDEVSLERLAKLEKELANFKEEQSQLNAQWQSEKEFIDKIRFLKEE
IDKTNLEIQQAERNYDLNKAAELRYGKLTELQQKIKDIESNLAAQQVTGESLLREEVIESDIAEIISKWTGIPISKLIES
EKEKLLHLEAELHRRVVGQEEAVTAVAEAIQRSRAGLADPNRPTASFIFLGPTGVGKTELAKALAQFLFDTEEALVRIDM
SEYMEKHAVSRLMGAPPGYVGYEEGGQLTEAIRRRPYSVILFDEIEKAHADVFNVMLQILDDGRLTDSQGRTVDFKNTVI
IMTSNIGSQFILDIAGDDARYEEMRNRVMEAMNANFRPEFLNRIDELIIFHGLQKDQLRSIVQLQVNRLAERLAEQKISI
QLTPEAYDFIAEVGYNPVYGARPLKRAVQKYVETAIAKGILKGEFKAGSAITVDVKDERLTFRI

Sequences:

>Translated_864_residues
MQPTNPNQFTEKAWQAIAQTPDIAKQNQQQQIESEHLLQALLEQDGLAKSIFTKAEIPLSTLRDRTATFIAQQPKISQPS
ESVYLGRSLDLLLDRADQHRKSFGDDFISVEHLILSYAKDDRFGKNLYKEFDLTENKLKTIITQIRGNQKVTDQNPEGKY
ESLEKYGRDLTSLARNGKLDPVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVNRDVPESLKDRTLI
ALDMGSLIAGAKYRGEFEERLKAVLKEVTDSEGQIILFIDEIHTVVGAGATQGAMDAGNLLKPMLARGELRCIGATTLDE
YRKYIEKDAALERRFQSVMVNEPNVVDTISILRGLKERYEVHHGVKIADTALVAAAMLSNRYISDRFLPDKAIDLVDEAA
AKLKMEITSKPEELDEIDRKILQLEMEKLSIQKEKDEVSLERLAKLEKELANFKEEQSQLNAQWQSEKEFIDKIRFLKEE
IDKTNLEIQQAERNYDLNKAAELRYGKLTELQQKIKDIESNLAAQQVTGESLLREEVIESDIAEIISKWTGIPISKLIES
EKEKLLHLEAELHRRVVGQEEAVTAVAEAIQRSRAGLADPNRPTASFIFLGPTGVGKTELAKALAQFLFDTEEALVRIDM
SEYMEKHAVSRLMGAPPGYVGYEEGGQLTEAIRRRPYSVILFDEIEKAHADVFNVMLQILDDGRLTDSQGRTVDFKNTVI
IMTSNIGSQFILDIAGDDARYEEMRNRVMEAMNANFRPEFLNRIDELIIFHGLQKDQLRSIVQLQVNRLAERLAEQKISI
QLTPEAYDFIAEVGYNPVYGARPLKRAVQKYVETAIAKGILKGEFKAGSAITVDVKDERLTFRI
>Mature_864_residues
MQPTNPNQFTEKAWQAIAQTPDIAKQNQQQQIESEHLLQALLEQDGLAKSIFTKAEIPLSTLRDRTATFIAQQPKISQPS
ESVYLGRSLDLLLDRADQHRKSFGDDFISVEHLILSYAKDDRFGKNLYKEFDLTENKLKTIITQIRGNQKVTDQNPEGKY
ESLEKYGRDLTSLARNGKLDPVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVNRDVPESLKDRTLI
ALDMGSLIAGAKYRGEFEERLKAVLKEVTDSEGQIILFIDEIHTVVGAGATQGAMDAGNLLKPMLARGELRCIGATTLDE
YRKYIEKDAALERRFQSVMVNEPNVVDTISILRGLKERYEVHHGVKIADTALVAAAMLSNRYISDRFLPDKAIDLVDEAA
AKLKMEITSKPEELDEIDRKILQLEMEKLSIQKEKDEVSLERLAKLEKELANFKEEQSQLNAQWQSEKEFIDKIRFLKEE
IDKTNLEIQQAERNYDLNKAAELRYGKLTELQQKIKDIESNLAAQQVTGESLLREEVIESDIAEIISKWTGIPISKLIES
EKEKLLHLEAELHRRVVGQEEAVTAVAEAIQRSRAGLADPNRPTASFIFLGPTGVGKTELAKALAQFLFDTEEALVRIDM
SEYMEKHAVSRLMGAPPGYVGYEEGGQLTEAIRRRPYSVILFDEIEKAHADVFNVMLQILDDGRLTDSQGRTVDFKNTVI
IMTSNIGSQFILDIAGDDARYEEMRNRVMEAMNANFRPEFLNRIDELIIFHGLQKDQLRSIVQLQVNRLAERLAEQKISI
QLTPEAYDFIAEVGYNPVYGARPLKRAVQKYVETAIAKGILKGEFKAGSAITVDVKDERLTFRI

Specific function: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=320, Percent_Identity=38.125, Blast_Score=211, Evalue=2e-54,
Organism=Escherichia coli, GI1788943, Length=858, Percent_Identity=55.5944055944056, Blast_Score=957, Evalue=0.0,
Organism=Escherichia coli, GI1787109, Length=402, Percent_Identity=40.7960199004975, Blast_Score=292, Evalue=7e-80,
Organism=Saccharomyces cerevisiae, GI6320464, Length=711, Percent_Identity=54.7116736990155, Blast_Score=799, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6323002, Length=866, Percent_Identity=43.0715935334873, Blast_Score=675, Evalue=0.0,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR018368
- InterPro:   IPR017730
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR004176
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 97696; Mature: 97696

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPTNPNQFTEKAWQAIAQTPDIAKQNQQQQIESEHLLQALLEQDGLAKSIFTKAEIPLS
CCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHH
TLRDRTATFIAQQPKISQPSESVYLGRSLDLLLDRADQHRKSFGDDFISVEHLILSYAKD
HHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
DRFGKNLYKEFDLTENKLKTIITQIRGNQKVTDQNPEGKYESLEKYGRDLTSLARNGKLD
CHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
PVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVNRDVPESLKDRTLI
CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEE
ALDMGSLIAGAKYRGEFEERLKAVLKEVTDSEGQIILFIDEIHTVVGAGATQGAMDAGNL
EEEHHHHHHCCHHCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCCCHHHH
LKPMLARGELRCIGATTLDEYRKYIEKDAALERRFQSVMVNEPNVVDTISILRGLKERYE
HHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VHHGVKIADTALVAAAMLSNRYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRK
HHCCCCHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHEEHHHCCCCHHHHHHHHH
ILQLEMEKLSIQKEKDEVSLERLAKLEKELANFKEEQSQLNAQWQSEKEFIDKIRFLKEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
IDKTNLEIQQAERNYDLNKAAELRYGKLTELQQKIKDIESNLAAQQVTGESLLREEVIES
HHHCCCHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIAEIISKWTGIPISKLIESEKEKLLHLEAELHRRVVGQEEAVTAVAEAIQRSRAGLADP
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
NRPTASFIFLGPTGVGKTELAKALAQFLFDTEEALVRIDMSEYMEKHAVSRLMGAPPGYV
CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHEECHHHHHHHHHHHHHHCCCCCCC
GYEEGGQLTEAIRRRPYSVILFDEIEKAHADVFNVMLQILDDGRLTDSQGRTVDFKNTVI
CCCCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEE
IMTSNIGSQFILDIAGDDARYEEMRNRVMEAMNANFRPEFLNRIDELIIFHGLQKDQLRS
EEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHH
IVQLQVNRLAERLAEQKISIQLTPEAYDFIAEVGYNPVYGARPLKRAVQKYVETAIAKGI
HHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LKGEFKAGSAITVDVKDERLTFRI
HHCCCCCCCEEEEEECCCCEEEEC
>Mature Secondary Structure
MQPTNPNQFTEKAWQAIAQTPDIAKQNQQQQIESEHLLQALLEQDGLAKSIFTKAEIPLS
CCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHH
TLRDRTATFIAQQPKISQPSESVYLGRSLDLLLDRADQHRKSFGDDFISVEHLILSYAKD
HHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
DRFGKNLYKEFDLTENKLKTIITQIRGNQKVTDQNPEGKYESLEKYGRDLTSLARNGKLD
CHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
PVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVNRDVPESLKDRTLI
CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEE
ALDMGSLIAGAKYRGEFEERLKAVLKEVTDSEGQIILFIDEIHTVVGAGATQGAMDAGNL
EEEHHHHHHCCHHCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCCCHHHH
LKPMLARGELRCIGATTLDEYRKYIEKDAALERRFQSVMVNEPNVVDTISILRGLKERYE
HHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VHHGVKIADTALVAAAMLSNRYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRK
HHCCCCHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHEEHHHCCCCHHHHHHHHH
ILQLEMEKLSIQKEKDEVSLERLAKLEKELANFKEEQSQLNAQWQSEKEFIDKIRFLKEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
IDKTNLEIQQAERNYDLNKAAELRYGKLTELQQKIKDIESNLAAQQVTGESLLREEVIES
HHHCCCHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIAEIISKWTGIPISKLIESEKEKLLHLEAELHRRVVGQEEAVTAVAEAIQRSRAGLADP
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
NRPTASFIFLGPTGVGKTELAKALAQFLFDTEEALVRIDMSEYMEKHAVSRLMGAPPGYV
CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHEECHHHHHHHHHHHHHHCCCCCCC
GYEEGGQLTEAIRRRPYSVILFDEIEKAHADVFNVMLQILDDGRLTDSQGRTVDFKNTVI
CCCCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEE
IMTSNIGSQFILDIAGDDARYEEMRNRVMEAMNANFRPEFLNRIDELIIFHGLQKDQLRS
EEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHH
IVQLQVNRLAERLAEQKISIQLTPEAYDFIAEVGYNPVYGARPLKRAVQKYVETAIAKGI
HHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LKGEFKAGSAITVDVKDERLTFRI
HHCCCCCCCEEEEEECCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]