| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170078900
Identifier: 170078900
GI number: 170078900
Start: 2384495
End: 2385037
Strand: Reverse
Name: 170078900
Synonym: SYNPCC7002_A2305
Alternate gene names: NA
Gene position: 2385037-2384495 (Counterclockwise)
Preceding gene: 170078903
Following gene: 170078899
Centisome position: 79.29
GC content: 51.38
Gene sequence:
>543_bases GTGAGCTTTTCCCAGAAGCCTTTTAGATTGCAACAAAAGACAAAATTTTCACCGACAGCCCAGGACAAATTCGGTAGCGA TCTGACGGCCTCAGAGAATGAACTGCATAGGTTCTGGGGGGCCGCCACTACAACCCCGTGGAGGTTAGTCCCTAATCTCT CAATTTATTCTCCTTTGCAATGGAGCAAAACCATGAAATCAACACAAGGTATTGGCGTACAGTTGTTGGATGGTCTGTCT TTGGGGTTGATGGTGCTGTTGTCTGGTGTCCCAGCGGCGATCGCCACCCCCACAGAAATGACCTGTCCAGAGGGATGGCG TCTCCATACCCAAGAACTCAATCCCCAGATCCGTGTCTGTTTACCCAAAAATATCCACCTCCCAACGCTCGCGGATCTCA GCCGACAACCGGCCCAGGTGCAGGTGCAACAACTGCGAATTATCCAAACTGGCGCTCAGATCGATCCGAGCCACCCCAAG GAATCCCACATTCAAAGTTCGAGCCGTGCCTCAATCCAGGTTTACCAACATACCAGCCAGTAA
Upstream 100 bases:
>100_bases GCTTTCTCCCTCAGTAATACTTGATTTCAAACAATCACAACAGCATTGGGGGCACTTTTCAGGATTTTTCCGCCGCCCGA AAATCTGCTCCATTAGTATA
Downstream 100 bases:
>100_bases CAATTTGGCGAGTTGTCGGGGGTTGATATTGTGCCAGAGTCAGCAAGCTCTGGTTTTTTGTTGGCGAAAGTGACTGGGGA GATTTTTTCTGAATCTAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 180; Mature: 179
Protein sequence:
>180_residues MSFSQKPFRLQQKTKFSPTAQDKFGSDLTASENELHRFWGAATTTPWRLVPNLSIYSPLQWSKTMKSTQGIGVQLLDGLS LGLMVLLSGVPAAIATPTEMTCPEGWRLHTQELNPQIRVCLPKNIHLPTLADLSRQPAQVQVQQLRIIQTGAQIDPSHPK ESHIQSSSRASIQVYQHTSQ
Sequences:
>Translated_180_residues MSFSQKPFRLQQKTKFSPTAQDKFGSDLTASENELHRFWGAATTTPWRLVPNLSIYSPLQWSKTMKSTQGIGVQLLDGLS LGLMVLLSGVPAAIATPTEMTCPEGWRLHTQELNPQIRVCLPKNIHLPTLADLSRQPAQVQVQQLRIIQTGAQIDPSHPK ESHIQSSSRASIQVYQHTSQ >Mature_179_residues SFSQKPFRLQQKTKFSPTAQDKFGSDLTASENELHRFWGAATTTPWRLVPNLSIYSPLQWSKTMKSTQGIGVQLLDGLSL GLMVLLSGVPAAIATPTEMTCPEGWRLHTQELNPQIRVCLPKNIHLPTLADLSRQPAQVQVQQLRIIQTGAQIDPSHPKE SHIQSSSRASIQVYQHTSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20037; Mature: 19906
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSQKPFRLQQKTKFSPTAQDKFGSDLTASENELHRFWGAATTTPWRLVPNLSIYSPLQ CCCCCCCCCHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCH WSKTMKSTQGIGVQLLDGLSLGLMVLLSGVPAAIATPTEMTCPEGWRLHTQELNPQIRVC HHHHHHHHCCCCEEECCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEEHHHCCCEEEEE LPKNIHLPTLADLSRQPAQVQVQQLRIIQTGAQIDPSHPKESHIQSSSRASIQVYQHTSQ ECCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCEEEEEEECCC >Mature Secondary Structure SFSQKPFRLQQKTKFSPTAQDKFGSDLTASENELHRFWGAATTTPWRLVPNLSIYSPLQ CCCCCCCCHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCH WSKTMKSTQGIGVQLLDGLSLGLMVLLSGVPAAIATPTEMTCPEGWRLHTQELNPQIRVC HHHHHHHHCCCCEEECCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEEHHHCCCEEEEE LPKNIHLPTLADLSRQPAQVQVQQLRIIQTGAQIDPSHPKESHIQSSSRASIQVYQHTSQ ECCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA