| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078859
Identifier: 170078859
GI number: 170078859
Start: 2343652
End: 2344158
Strand: Reverse
Name: 170078859
Synonym: SYNPCC7002_A2263
Alternate gene names: NA
Gene position: 2344158-2343652 (Counterclockwise)
Preceding gene: 170078861
Following gene: 170078858
Centisome position: 77.93
GC content: 50.69
Gene sequence:
>507_bases ATGATTGAAATGCACGTTGCTGGCATTGCCCTTGATGCCATTACTCGGAGCCCGATCATTCTCCTGAAAGATGCCTCGGA ACGGCGTGCTTTACCGATCTATATTGCCCAGGATCAAGCCCGCTCAATTATGAATGTCTTGGAGCAAAAAACACCGCCAC GGCCCCTCACCCATGATCTCTTTGCGGATCTATTGGAAGCTTGGGATCTCACCCTCGATAAAATTATTATCCATGCCCTA GAAGAACACACTTTCTATGCGGTGCTTTGTACCTCCCAGGGGGAAGAAACCCAAGAAATTGACTGTCGCCCCAGTGATGC GATCGCCATTGCCCTGCGCACCGAAAGTCCGATTTGGGTCGTCGAAGAAGTGATTTCTGAGGCTTCAATTCCCGTAGACC GCGATGCTGACGAAGAAGAACGGCAAGCCTTCCGCGCCTTTGTCGATCAGATTAGCCCCGAAGATTTAATCCGCCACAGC CAATCCGCCAATCCAGAAGAAAGCTAA
Upstream 100 bases:
>100_bases AGGCCCAACATCCCCCCAGAATATCGAAGCTGTAGGATACTAGTTAGTAAGGGAATCAAATATTGCTCCCGTTGCCATCC CTACCCCGAGGCCCAGATCC
Downstream 100 bases:
>100_bases GGCATTGGGGGTTAAAGCCGGATGACGATTTTTGTCTACAGCTACAGTGACCCACTCCTGGATGCCGCCCCAGAACCGGA ACTTTGGGGGGTTGAGGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 168; Mature: 168
Protein sequence:
>168_residues MIEMHVAGIALDAITRSPIILLKDASERRALPIYIAQDQARSIMNVLEQKTPPRPLTHDLFADLLEAWDLTLDKIIIHAL EEHTFYAVLCTSQGEETQEIDCRPSDAIAIALRTESPIWVVEEVISEASIPVDRDADEEERQAFRAFVDQISPEDLIRHS QSANPEES
Sequences:
>Translated_168_residues MIEMHVAGIALDAITRSPIILLKDASERRALPIYIAQDQARSIMNVLEQKTPPRPLTHDLFADLLEAWDLTLDKIIIHAL EEHTFYAVLCTSQGEETQEIDCRPSDAIAIALRTESPIWVVEEVISEASIPVDRDADEEERQAFRAFVDQISPEDLIRHS QSANPEES >Mature_168_residues MIEMHVAGIALDAITRSPIILLKDASERRALPIYIAQDQARSIMNVLEQKTPPRPLTHDLFADLLEAWDLTLDKIIIHAL EEHTFYAVLCTSQGEETQEIDCRPSDAIAIALRTESPIWVVEEVISEASIPVDRDADEEERQAFRAFVDQISPEDLIRHS QSANPEES
Specific function: Unknown
COG id: COG1259
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003729 [H]
Pfam domain/function: PF02577 DUF151 [H]
EC number: NA
Molecular weight: Translated: 18942; Mature: 18942
Theoretical pI: Translated: 4.16; Mature: 4.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEMHVAGIALDAITRSPIILLKDASERRALPIYIAQDQARSIMNVLEQKTPPRPLTHDL CCEEEEHHHHHHHHCCCCEEEEECCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCHHH FADLLEAWDLTLDKIIIHALEEHTFYAVLCTSQGEETQEIDCRPSDAIAIALRTESPIWV HHHHHHHHCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHH VEEVISEASIPVDRDADEEERQAFRAFVDQISPEDLIRHSQSANPEES HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure MIEMHVAGIALDAITRSPIILLKDASERRALPIYIAQDQARSIMNVLEQKTPPRPLTHDL CCEEEEHHHHHHHHCCCCEEEEECCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCHHH FADLLEAWDLTLDKIIIHALEEHTFYAVLCTSQGEETQEIDCRPSDAIAIALRTESPIWV HHHHHHHHCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHH VEEVISEASIPVDRDADEEERQAFRAFVDQISPEDLIRHSQSANPEES HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]