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The map label for this gene is arnC [H]

Identifier: 170078783

GI number: 170078783

Start: 2274910

End: 2275914

Strand: Direct

Name: arnC [H]

Synonym: SYNPCC7002_A2185

Alternate gene names: 170078783

Gene position: 2274910-2275914 (Clockwise)

Preceding gene: 170078782

Following gene: 170078785

Centisome position: 75.63

GC content: 51.34

Gene sequence:

>1005_bases
ATGTCTAGTCCTGCCCCGATTACCGAAGCGCCTACCACGACTCAAACTCTGTCGATTGTGGTGCCCATCTACAACGAAGT
GGAAAGTCTGCCGCACCTCCTCCAGGCGATCGCCTCGGTGATGCAAGCCCATAACTATGCCTACGAAATTATCTGTGTGG
ACGATGGCTCTAAGGATGGCTCTACGGCACTCTTAAAAAAATTAGCCACCGAGCGGGAAGACCTGCGGGCGATTATTTTG
CGGCGCAACTACGGCCAAACTCCAGCAATGGCAGCGGGATTCCAACACGCCCAAGGGGAGATCATTATTTCCCTAGATGC
AGATTTACAAAATGATCCGGCGGATATCCCCAACCTGCTCCAAAAAATGAACGAAGGTTATGATCTCGTCAGCGGTTGGC
GCAAGGAACGACAGGATAACCAGTGGACGCGGCTTCTCCCTTCAAAAATTGCCAATGCCCTGATCCGTCGGGTAACGGGG
GTCAATCTCCATGATTATGGCTGTTCCCTCAAGGCTTACCGGACGGAAATTTTGGCAGATCTGAATCTCTATGGGGAATT
GCACCGCTTCATCCCCGCCCTAGCGTTTATTGAGGGAGCGACTATTTCTGAAATTCCCGTGCGGCACCATGCCCGCCAGT
TTGGCAGCAGTAAATACGGCCTAGACCGGACGTTTCGGGTGCTGCTTGATCTGTTGACGGTGTGGTTTATGAAAAAATTC
CTCACCCGCCCGATGCACGTTTTTGGCTACCTCGGCATTATTTTTATGCTCGTTGGTTTTATTTTGGGGGGCTATTTATC
TGTCCTCAAGTTATTTCTCGGTCAAGCGATTGGCGATCGCCCTTTGTTGCTCCTGGTAGCGATCCTTTTATTAGCCGGGG
TGCAACTCTTTGGTTTTGGCCTCTTGGGGGAACTGTTGATCCGCACCTACCACGAATCTCAAGGGCGGCCCATCTACCGG
GTTCGTTCCATTGTTGGGCAGTCTAAACATTTTTCGGCCCAATAA

Upstream 100 bases:

>100_bases
TATGATTAGCCGCGCCTACCACCAGACCCTCTGCGGTTTTGGTCGCGTCATGGAAAGTTACGCCCCACCGTCCTTAGCTT
GTCAAATTTAACCACCATTG

Downstream 100 bases:

>100_bases
AAAACTCCCCATTCCAGAGATGGAACAGAGAGTTGGGTGATTTGTATTTAAAAAATTTCGGGCAGTCTAGGCCGCAAACT
TAATCTTCAGGAAATCTTCC

Product: glycosyl transferase, group 2 family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSSPAPITEAPTTTQTLSIVVPIYNEVESLPHLLQAIASVMQAHNYAYEIICVDDGSKDGSTALLKKLATEREDLRAIIL
RRNYGQTPAMAAGFQHAQGEIIISLDADLQNDPADIPNLLQKMNEGYDLVSGWRKERQDNQWTRLLPSKIANALIRRVTG
VNLHDYGCSLKAYRTEILADLNLYGELHRFIPALAFIEGATISEIPVRHHARQFGSSKYGLDRTFRVLLDLLTVWFMKKF
LTRPMHVFGYLGIIFMLVGFILGGYLSVLKLFLGQAIGDRPLLLLVAILLLAGVQLFGFGLLGELLIRTYHESQGRPIYR
VRSIVGQSKHFSAQ

Sequences:

>Translated_334_residues
MSSPAPITEAPTTTQTLSIVVPIYNEVESLPHLLQAIASVMQAHNYAYEIICVDDGSKDGSTALLKKLATEREDLRAIIL
RRNYGQTPAMAAGFQHAQGEIIISLDADLQNDPADIPNLLQKMNEGYDLVSGWRKERQDNQWTRLLPSKIANALIRRVTG
VNLHDYGCSLKAYRTEILADLNLYGELHRFIPALAFIEGATISEIPVRHHARQFGSSKYGLDRTFRVLLDLLTVWFMKKF
LTRPMHVFGYLGIIFMLVGFILGGYLSVLKLFLGQAIGDRPLLLLVAILLLAGVQLFGFGLLGELLIRTYHESQGRPIYR
VRSIVGQSKHFSAQ
>Mature_333_residues
SSPAPITEAPTTTQTLSIVVPIYNEVESLPHLLQAIASVMQAHNYAYEIICVDDGSKDGSTALLKKLATEREDLRAIILR
RNYGQTPAMAAGFQHAQGEIIISLDADLQNDPADIPNLLQKMNEGYDLVSGWRKERQDNQWTRLLPSKIANALIRRVTGV
NLHDYGCSLKAYRTEILADLNLYGELHRFIPALAFIEGATISEIPVRHHARQFGSSKYGLDRTFRVLLDLLTVWFMKKFL
TRPMHVFGYLGIIFMLVGFILGGYLSVLKLFLGQAIGDRPLLLLVAILLLAGVQLFGFGLLGELLIRTYHESQGRPIYRV
RSIVGQSKHFSAQ

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=231, Percent_Identity=31.6017316017316, Blast_Score=93, Evalue=4e-19,
Organism=Escherichia coli, GI1788588, Length=317, Percent_Identity=40.3785488958991, Blast_Score=229, Evalue=1e-61,
Organism=Escherichia coli, GI1788692, Length=316, Percent_Identity=29.1139240506329, Blast_Score=155, Evalue=4e-39,
Organism=Caenorhabditis elegans, GI71999402, Length=221, Percent_Identity=30.7692307692308, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI25146207, Length=124, Percent_Identity=32.258064516129, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6325441, Length=109, Percent_Identity=31.1926605504587, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24585265, Length=222, Percent_Identity=30.6306306306306, Blast_Score=99, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 37346; Mature: 37215

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPAPITEAPTTTQTLSIVVPIYNEVESLPHLLQAIASVMQAHNYAYEIICVDDGSKDG
CCCCCCCCCCCCCHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
STALLKKLATEREDLRAIILRRNYGQTPAMAAGFQHAQGEIIISLDADLQNDPADIPNLL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHH
QKMNEGYDLVSGWRKERQDNQWTRLLPSKIANALIRRVTGVNLHDYGCSLKAYRTEILAD
HHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHH
LNLYGELHRFIPALAFIEGATISEIPVRHHARQFGSSKYGLDRTFRVLLDLLTVWFMKKF
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LTRPMHVFGYLGIIFMLVGFILGGYLSVLKLFLGQAIGDRPLLLLVAILLLAGVQLFGFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LLGELLIRTYHESQGRPIYRVRSIVGQSKHFSAQ
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SSPAPITEAPTTTQTLSIVVPIYNEVESLPHLLQAIASVMQAHNYAYEIICVDDGSKDG
CCCCCCCCCCCCHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
STALLKKLATEREDLRAIILRRNYGQTPAMAAGFQHAQGEIIISLDADLQNDPADIPNLL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHH
QKMNEGYDLVSGWRKERQDNQWTRLLPSKIANALIRRVTGVNLHDYGCSLKAYRTEILAD
HHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHH
LNLYGELHRFIPALAFIEGATISEIPVRHHARQFGSSKYGLDRTFRVLLDLLTVWFMKKF
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LTRPMHVFGYLGIIFMLVGFILGGYLSVLKLFLGQAIGDRPLLLLVAILLLAGVQLFGFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LLGELLIRTYHESQGRPIYRVRSIVGQSKHFSAQ
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA