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The map label for this gene is 170078774

Identifier: 170078774

GI number: 170078774

Start: 2266407

End: 2266937

Strand: Reverse

Name: 170078774

Synonym: SYNPCC7002_A2176

Alternate gene names: NA

Gene position: 2266937-2266407 (Counterclockwise)

Preceding gene: 170078775

Following gene: 170078761

Centisome position: 75.36

GC content: 44.82

Gene sequence:

>531_bases
ATGGATCAAGAGTTTCTGCCAATCTTTTATCTGTCTATCCTCGTTGCTCTGCTAGGGGGATTAGCCTTTTTCCTATTCCG
TCAAGTTATTAAGACCCGCCGCGTTGAAAACACTTTTTCTAAGCTACAAACCAAGCTCAAGCAAGGCTCTGGCACTGCAA
AGGAGTATTACGAACTGGGTAGTCTCTATCTCGACAAAAAACTCTACGTCCAAGCGGCCCAACTGCTCCAAAAAGCACTG
AAGGTAGAAGACGAGTTGGAACCAGAAAATCAGGCATTAGTATATAACGCCCTTGGTTATGCTTATTTTGCCCAGGAACA
ATACGACCTCGCCATTCGCCAGTACAAAGCAGCCCTAAAGGAAGTCCCAGATTACGTCACAGCTTTAAACAATCTGGCCA
ATGTGTACGAAAAAAAGCAAATGACAGCGAAAGCCCTGGAAACCTATGAACTTGCCCTAAAAGCAGAACCAGAGAATAAA
ACAGCGAAAAAACGGGCCGAATCACTCCGCAAACGGTTTGTTTCTCCTTAG

Upstream 100 bases:

>100_bases
TGATACACTAGCAGGGCTTAAGTTTCTGTTGATTTTGCCGCAGCAGACTTAGGGAACAATAAAAATTTTTTATAAAACCT
GCTATCAATCATTTCCTGTT

Downstream 100 bases:

>100_bases
ACCTCTTCCGGCCTTCGGCCACCTTCCCCAGAGAAGGATGTGCTGGGGCCTTTTTTGGCGGCTGAATTATTTCACACGAG
CCCGGAAGCGGATATAGCCA

Product: TPR domain-containing protein

Products: NA

Alternate protein names: Photosystem I Assembly Related Protein Ycf; Tetratricopeptide Repeat Domain Protein; Photosystem I Assembly Protein; Photosystem I Assembly Related Protein; Tetratricopeptide Repeat Protein; TPR Repeat-Containing Photosystem I Assembly Protein Ycf; TPR Domain-Containing Protein

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MDQEFLPIFYLSILVALLGGLAFFLFRQVIKTRRVENTFSKLQTKLKQGSGTAKEYYELGSLYLDKKLYVQAAQLLQKAL
KVEDELEPENQALVYNALGYAYFAQEQYDLAIRQYKAALKEVPDYVTALNNLANVYEKKQMTAKALETYELALKAEPENK
TAKKRAESLRKRFVSP

Sequences:

>Translated_176_residues
MDQEFLPIFYLSILVALLGGLAFFLFRQVIKTRRVENTFSKLQTKLKQGSGTAKEYYELGSLYLDKKLYVQAAQLLQKAL
KVEDELEPENQALVYNALGYAYFAQEQYDLAIRQYKAALKEVPDYVTALNNLANVYEKKQMTAKALETYELALKAEPENK
TAKKRAESLRKRFVSP
>Mature_176_residues
MDQEFLPIFYLSILVALLGGLAFFLFRQVIKTRRVENTFSKLQTKLKQGSGTAKEYYELGSLYLDKKLYVQAAQLLQKAL
KVEDELEPENQALVYNALGYAYFAQEQYDLAIRQYKAALKEVPDYVTALNNLANVYEKKQMTAKALETYELALKAEPENK
TAKKRAESLRKRFVSP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20237; Mature: 20237

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQEFLPIFYLSILVALLGGLAFFLFRQVIKTRRVENTFSKLQTKLKQGSGTAKEYYELG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SLYLDKKLYVQAAQLLQKALKVEDELEPENQALVYNALGYAYFAQEQYDLAIRQYKAALK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVPDYVTALNNLANVYEKKQMTAKALETYELALKAEPENKTAKKRAESLRKRFVSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDQEFLPIFYLSILVALLGGLAFFLFRQVIKTRRVENTFSKLQTKLKQGSGTAKEYYELG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SLYLDKKLYVQAAQLLQKALKVEDELEPENQALVYNALGYAYFAQEQYDLAIRQYKAALK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVPDYVTALNNLANVYEKKQMTAKALETYELALKAEPENKTAKKRAESLRKRFVSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA