| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078747
Identifier: 170078747
GI number: 170078747
Start: 2231296
End: 2232150
Strand: Reverse
Name: 170078747
Synonym: SYNPCC7002_A2149
Alternate gene names: NA
Gene position: 2232150-2231296 (Counterclockwise)
Preceding gene: 170078749
Following gene: 170078745
Centisome position: 74.21
GC content: 50.64
Gene sequence:
>855_bases ATGCGATCGCTGCCCATTGGGTTATATCTGGAGCAGCCCCAAACCTGGCTCCACCGACTAGACCCTCGGGTAAAACTCGC TTGGTTGATGAGTTTTTTGATTGGGCCGATTTTGGCGAACAACCTGTGGCGCTTGGGTTTGGTGGGGTTATTAATCGCGA TCACCCTAACGGCATTAATTCCCCTGCGGGTCTGGAAACAACAGATGGGGTTGCTATTAATTTTTTGTTTGGTGTTGTTT GGGGTTACGTTAATCACCCCCGATGGCTTGGTGCTTGATCATCAGCCCCGTTTACCGGCAGAGGATCTAGATATTCAGCA AAACTATGAATATGTGGTGTGGCAGTTTAAATTTATCTCCGTCACGCGCCTCAAACTCGATCTGGGCATTAAGCTCAGTA CACAAATTTTCACGTTGCTCTACAGCACCAATCTGTATCTGTTGACCACGGCAGCGGAAGAAATTACCACGGGTTTAGAG TTTCTCCTGGGGCCCCTGCGCCGACTCAAGGTTCCGGTGACAGAAATTTTGCTCACCCTGACCCTCTCACTCCGATTTAT TCCCCTTGTGTTAGAGGAAATTCAGAATTTAACGCGTTCAGTCCGCACAAGGGCGATCGCCTGGAAGACCCTAGGGTTCA AACAGAGTGCTCAACTGTGGCTGATGGTCTCCGAAAAACTCCTCGAAAATCTCCTAATGCGGGCTGAACAAATGGCGACG GCGATGGATATCCGGGGCTTCACCAGTCCAAACCAGCACCTTGTCCGTTGGCATCAACTGCGCTTCCACCGTTGGGATTG GCTGATCCTTGTGTTGCTGCTGCCCTTTTGGTCATTGCGCTTCCTCTGGGGCTAG
Upstream 100 bases:
>100_bases CCTAGGATCCAGCATACTCCCTTCTGAGGGCGGGAAATTTTAAGGCTTATTACATAATGGAAGTTGATTTTTTTACGGAA TTTTCACCACGATGGATTTG
Downstream 100 bases:
>100_bases TTAGTAACGAATCCGTGGGTCGATCAACGCATTCACAATATCAATCACCAGACTGACCACCACCACAATCGCCCCGAAAA ACACCATAATCCCCTGTACC
Product: putative cobalt transport protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 284; Mature: 284
Protein sequence:
>284_residues MRSLPIGLYLEQPQTWLHRLDPRVKLAWLMSFLIGPILANNLWRLGLVGLLIAITLTALIPLRVWKQQMGLLLIFCLVLF GVTLITPDGLVLDHQPRLPAEDLDIQQNYEYVVWQFKFISVTRLKLDLGIKLSTQIFTLLYSTNLYLLTTAAEEITTGLE FLLGPLRRLKVPVTEILLTLTLSLRFIPLVLEEIQNLTRSVRTRAIAWKTLGFKQSAQLWLMVSEKLLENLLMRAEQMAT AMDIRGFTSPNQHLVRWHQLRFHRWDWLILVLLLPFWSLRFLWG
Sequences:
>Translated_284_residues MRSLPIGLYLEQPQTWLHRLDPRVKLAWLMSFLIGPILANNLWRLGLVGLLIAITLTALIPLRVWKQQMGLLLIFCLVLF GVTLITPDGLVLDHQPRLPAEDLDIQQNYEYVVWQFKFISVTRLKLDLGIKLSTQIFTLLYSTNLYLLTTAAEEITTGLE FLLGPLRRLKVPVTEILLTLTLSLRFIPLVLEEIQNLTRSVRTRAIAWKTLGFKQSAQLWLMVSEKLLENLLMRAEQMAT AMDIRGFTSPNQHLVRWHQLRFHRWDWLILVLLLPFWSLRFLWG >Mature_284_residues MRSLPIGLYLEQPQTWLHRLDPRVKLAWLMSFLIGPILANNLWRLGLVGLLIAITLTALIPLRVWKQQMGLLLIFCLVLF GVTLITPDGLVLDHQPRLPAEDLDIQQNYEYVVWQFKFISVTRLKLDLGIKLSTQIFTLLYSTNLYLLTTAAEEITTGLE FLLGPLRRLKVPVTEILLTLTLSLRFIPLVLEEIQNLTRSVRTRAIAWKTLGFKQSAQLWLMVSEKLLENLLMRAEQMAT AMDIRGFTSPNQHLVRWHQLRFHRWDWLILVLLLPFWSLRFLWG
Specific function: Unknown
COG id: COG0619
COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters
Gene ontology:
Cell location: Membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ycf92 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003339 [H]
Pfam domain/function: PF02361 CbiQ [H]
EC number: NA
Molecular weight: Translated: 33102; Mature: 33102
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSLPIGLYLEQPQTWLHRLDPRVKLAWLMSFLIGPILANNLWRLGLVGLLIAITLTALI CCCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLRVWKQQMGLLLIFCLVLFGVTLITPDGLVLDHQPRLPAEDLDIQQNYEYVVWQFKFIS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEE VTRLKLDLGIKLSTQIFTLLYSTNLYLLTTAAEEITTGLEFLLGPLRRLKVPVTEILLTL EEEEEEEECCCHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHH TLSLRFIPLVLEEIQNLTRSVRTRAIAWKTLGFKQSAQLWLMVSEKLLENLLMRAEQMAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AMDIRGFTSPNQHLVRWHQLRFHRWDWLILVLLLPFWSLRFLWG HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRSLPIGLYLEQPQTWLHRLDPRVKLAWLMSFLIGPILANNLWRLGLVGLLIAITLTALI CCCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLRVWKQQMGLLLIFCLVLFGVTLITPDGLVLDHQPRLPAEDLDIQQNYEYVVWQFKFIS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEE VTRLKLDLGIKLSTQIFTLLYSTNLYLLTTAAEEITTGLEFLLGPLRRLKVPVTEILLTL EEEEEEEECCCHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHH TLSLRFIPLVLEEIQNLTRSVRTRAIAWKTLGFKQSAQLWLMVSEKLLENLLMRAEQMAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AMDIRGFTSPNQHLVRWHQLRFHRWDWLILVLLLPFWSLRFLWG HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]