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The map label for this gene is tnpA [H]

Identifier: 170078739

GI number: 170078739

Start: 2223281

End: 2224609

Strand: Reverse

Name: tnpA [H]

Synonym: SYNPCC7002_A2141

Alternate gene names: 170078739

Gene position: 2224609-2223281 (Counterclockwise)

Preceding gene: 170078741

Following gene: 170078735

Centisome position: 73.96

GC content: 49.06

Gene sequence:

>1329_bases
ATGCAAGACCATCAATCAGTAAATATCCGCGCCCTGAGCCGAAATCGAGCAGAACAAGTGGGGTACTATCGTTTCCTTGA
CAACGACAATGTCAGCCTATGTGAGTTGATACAGAGCGTGTCTGACGCCTGCCAACAACAAGTGGGAGGACTCCACGTCC
TGGCCATTAGTGATAGCAGTGAGGTTAACCTACAAGCCCATGTAGGACGAATCAACCCAGAAGGATTAGGAGTGGTAGGC
AATAACCAAGATGTCGGCTTTTTTATTCACCCGACTTTAATCGTGAACGCCGAAACAGGGTTTCCCCTAGGTCTCAGTAA
TATCCAAATATGGAGCCGAAAAGCAGTTCGTCCCAATAAGCATCAACGACGTTACCTAAAGCTACCGATTGAAGAGAAAG
AATCCTACAAATGGCTACTGTCTGCCGAAGCATCTGAGCCCTGTCTGAAAAACGGGGGAGTGAAACAAGTAACCCATGTG
GGCGACCGCGAAAATGACATATATCAAGAATGGGTGCGAGTTCCCAATGACCAAACCCATGTTTTAGTGAGAGCTTGTCG
GGACCGTCGCCTCTGGGATGAGCAGCAATCCCTGTATGAATACTTAAGCGCACAGCACTGCGAAGGGACTTATTCGGTGC
AGGTAGTGGCAGATTCTCGATTGGGACGTACTGCCCGCGAAGCTTGGTTAGCGGTACGGATGACTCCAGTTCAGATTCAA
CGGCCAGATACAGTGGAAGCTCAGGATTATCCCGAGAAGGTACAGCTGTATGCCGTAGAAGCAAAGGAAGTCAATCCTCC
CGTAGGACAAGACCCCATTCATTGGCGATTGCTTACAACTCATCGGGTCGTCAGTCTAGAGCAAGCTTTACAAGTGATTG
AATGGTATCGTTGGCGCTGGCGAATTGAGCAACTTTTTGGCACTTTGAAGCGGTCTGGATTGGATTTAGAATCCACGCAG
TTAGAGTCGGTTAGTGCCATTGAACGACTGACAGTTTTAGCTTTGTCCGTGGCCCTAAGGGTGTTGCAGCTTCTAGAGGG
TCGAGATGATTCCAGCCTTGTTGCTCAGGTGGTATTTAGTCCTGAAGAGCAGGAATGTCTCAGGCAACTAGCTCCGACAT
TGCAGGGGAAAACTCAAAAGCAGCAAAATCCTCATGCTTCAGCTTCGTTGTCTTGGGCAACTTGGCTAATTGGCCGTTTA
GGAGGATGGTCTGGGTATCGCTCCCAGTCTCCTCCTGGCATCCGAACTTTGTGGAGGGGGCTATACCAGTTTGAATCTAT
CTTCCATGGATGGAAGCTCGCTCAATCCACACTTGTGTGTACACAGTAG

Upstream 100 bases:

>100_bases
TTCCAATGGATAATCCAATCCTGATTCACGCTACACAAATGAGCGGCAGCTCCTTTGGCGACCCTCGCCTAGAAAAAAGG
GGGCGGCATTGTATGAAGCG

Downstream 100 bases:

>100_bases
CCCCTTAAGGGGAGTTAGAGGGGTGGCCCTTGAGGGGAGTTAGAGGGGTGGCTCGAAAGCAATAAAAATCAGGGTGCGCA
AACAACCCTGATCCCCAACG

Product: transposase

Products: NA

Alternate protein names: Tnp [H]

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MQDHQSVNIRALSRNRAEQVGYYRFLDNDNVSLCELIQSVSDACQQQVGGLHVLAISDSSEVNLQAHVGRINPEGLGVVG
NNQDVGFFIHPTLIVNAETGFPLGLSNIQIWSRKAVRPNKHQRRYLKLPIEEKESYKWLLSAEASEPCLKNGGVKQVTHV
GDRENDIYQEWVRVPNDQTHVLVRACRDRRLWDEQQSLYEYLSAQHCEGTYSVQVVADSRLGRTAREAWLAVRMTPVQIQ
RPDTVEAQDYPEKVQLYAVEAKEVNPPVGQDPIHWRLLTTHRVVSLEQALQVIEWYRWRWRIEQLFGTLKRSGLDLESTQ
LESVSAIERLTVLALSVALRVLQLLEGRDDSSLVAQVVFSPEEQECLRQLAPTLQGKTQKQQNPHASASLSWATWLIGRL
GGWSGYRSQSPPGIRTLWRGLYQFESIFHGWKLAQSTLVCTQ

Sequences:

>Translated_442_residues
MQDHQSVNIRALSRNRAEQVGYYRFLDNDNVSLCELIQSVSDACQQQVGGLHVLAISDSSEVNLQAHVGRINPEGLGVVG
NNQDVGFFIHPTLIVNAETGFPLGLSNIQIWSRKAVRPNKHQRRYLKLPIEEKESYKWLLSAEASEPCLKNGGVKQVTHV
GDRENDIYQEWVRVPNDQTHVLVRACRDRRLWDEQQSLYEYLSAQHCEGTYSVQVVADSRLGRTAREAWLAVRMTPVQIQ
RPDTVEAQDYPEKVQLYAVEAKEVNPPVGQDPIHWRLLTTHRVVSLEQALQVIEWYRWRWRIEQLFGTLKRSGLDLESTQ
LESVSAIERLTVLALSVALRVLQLLEGRDDSSLVAQVVFSPEEQECLRQLAPTLQGKTQKQQNPHASASLSWATWLIGRL
GGWSGYRSQSPPGIRTLWRGLYQFESIFHGWKLAQSTLVCTQ
>Mature_442_residues
MQDHQSVNIRALSRNRAEQVGYYRFLDNDNVSLCELIQSVSDACQQQVGGLHVLAISDSSEVNLQAHVGRINPEGLGVVG
NNQDVGFFIHPTLIVNAETGFPLGLSNIQIWSRKAVRPNKHQRRYLKLPIEEKESYKWLLSAEASEPCLKNGGVKQVTHV
GDRENDIYQEWVRVPNDQTHVLVRACRDRRLWDEQQSLYEYLSAQHCEGTYSVQVVADSRLGRTAREAWLAVRMTPVQIQ
RPDTVEAQDYPEKVQLYAVEAKEVNPPVGQDPIHWRLLTTHRVVSLEQALQVIEWYRWRWRIEQLFGTLKRSGLDLESTQ
LESVSAIERLTVLALSVALRVLQLLEGRDDSSLVAQVVFSPEEQECLRQLAPTLQGKTQKQQNPHASASLSWATWLIGRL
GGWSGYRSQSPPGIRTLWRGLYQFESIFHGWKLAQSTLVCTQ

Specific function: Mediates transposition of transposon Tn5 by a 'cut and paste' mechanism. First, the monomeric transposase binds the 19 bp inverted DNA repeats flanking the transposon. Then, dimerization of the DNA-bound transposase creates a synaptic DNA complex. After n

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR002559
- InterPro:   IPR003201
- InterPro:   IPR014737
- InterPro:   IPR014736
- InterPro:   IPR014735 [H]

Pfam domain/function: PF01609 Transposase_11; PF02281 Transposase_Tn5 [H]

EC number: NA

Molecular weight: Translated: 50348; Mature: 50348

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDHQSVNIRALSRNRAEQVGYYRFLDNDNVSLCELIQSVSDACQQQVGGLHVLAISDSS
CCCCCCEEEEEECCCHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
EVNLQAHVGRINPEGLGVVGNNQDVGFFIHPTLIVNAETGFPLGLSNIQIWSRKAVRPNK
CEEEEEEECCCCCCCEEEECCCCCCEEEEECEEEEECCCCCCCCCCCEEEEECCCCCCCC
HQRRYLKLPIEEKESYKWLLSAEASEPCLKNGGVKQVTHVGDRENDIYQEWVRVPNDQTH
CCCCEEECCCCCCCCEEEEEECCCCCCHHHCCCCHHHHHCCCCCHHHHHHHHHCCCCCHH
VLVRACRDRRLWDEQQSLYEYLSAQHCEGTYSVQVVADSRLGRTAREAWLAVRMTPVQIQ
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHEEEEEECEEEEE
RPDTVEAQDYPEKVQLYAVEAKEVNPPVGQDPIHWRLLTTHRVVSLEQALQVIEWYRWRW
CCCCCCCCCCCCEEEEEEEEHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
RIEQLFGTLKRSGLDLESTQLESVSAIERLTVLALSVALRVLQLLEGRDDSSLVAQVVFS
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
PEEQECLRQLAPTLQGKTQKQQNPHASASLSWATWLIGRLGGWSGYRSQSPPGIRTLWRG
CCHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
LYQFESIFHGWKLAQSTLVCTQ
HHHHHHHHHHHHHHHCEEECCC
>Mature Secondary Structure
MQDHQSVNIRALSRNRAEQVGYYRFLDNDNVSLCELIQSVSDACQQQVGGLHVLAISDSS
CCCCCCEEEEEECCCHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
EVNLQAHVGRINPEGLGVVGNNQDVGFFIHPTLIVNAETGFPLGLSNIQIWSRKAVRPNK
CEEEEEEECCCCCCCEEEECCCCCCEEEEECEEEEECCCCCCCCCCCEEEEECCCCCCCC
HQRRYLKLPIEEKESYKWLLSAEASEPCLKNGGVKQVTHVGDRENDIYQEWVRVPNDQTH
CCCCEEECCCCCCCCEEEEEECCCCCCHHHCCCCHHHHHCCCCCHHHHHHHHHCCCCCHH
VLVRACRDRRLWDEQQSLYEYLSAQHCEGTYSVQVVADSRLGRTAREAWLAVRMTPVQIQ
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHEEEEEECEEEEE
RPDTVEAQDYPEKVQLYAVEAKEVNPPVGQDPIHWRLLTTHRVVSLEQALQVIEWYRWRW
CCCCCCCCCCCCEEEEEEEEHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
RIEQLFGTLKRSGLDLESTQLESVSAIERLTVLALSVALRVLQLLEGRDDSSLVAQVVFS
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
PEEQECLRQLAPTLQGKTQKQQNPHASASLSWATWLIGRLGGWSGYRSQSPPGIRTLWRG
CCHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
LYQFESIFHGWKLAQSTLVCTQ
HHHHHHHHHHHHHHHCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 6260374; 6271452; 7867940; 6291786; 10884228; 12367522; 11896402 [H]