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The map label for this gene is yrrB [H]

Identifier: 170078681

GI number: 170078681

Start: 2158249

End: 2159205

Strand: Reverse

Name: yrrB [H]

Synonym: SYNPCC7002_A2078

Alternate gene names: 170078681

Gene position: 2159205-2158249 (Counterclockwise)

Preceding gene: 170078685

Following gene: 170078679

Centisome position: 71.78

GC content: 53.71

Gene sequence:

>957_bases
TTGCGTTTAAGTTTAAGTTGGATAAATATCTGTAAATCTGTGCTGAATTTATTTACGCTTCGCAATGTTTTTATCGCTCT
GCTCTTTTTGGGTTTGCCTAGGGGAGAGGCGATCGCCCAAGAAATCCCCCAGACTCCAGCGCTGCAGACATGGCCGAGCA
TTACCCCAACAACCCCAGCAGCCAAAGCCAAGCTCAGTGAGGGATTAGCCCTCATCCAGCAGGGAAATTTAGACGGGGCG
ATCGCGCAATTTCAACAGGCGATCGCCCTCGATCCGCTCCTGTGGCAGGCCCATTACAATCTGGGTTTAGCCCTGGGGCA
ACGGGGGGATTTACCGAGCGCGGCCCAGGCTTTTCTTGAAACCATTGCCCTCCAGCCTAATTTTGCGGTGGCCTATGGCA
ATCTGGGGGGCGTGCTCATCGATAGTCAAAATTGGCCCCAGGCAGAAACCTATCTCCGGCGGGCTTTATCTTTAGATCCC
AATTTGGCGATCGCCCATTACAACCTCGGCTTAATTTATCGCCACCAGGGCAATCGAGACGCCGCCATCCAAGCGTGGCA
AAAGGCCCGTGAATTAGCCCCTAATTTTCCTGACGCTACCATCCAACTAGCGGAGTTATACCTCGCCGGTGATCGCCCCG
AAGCAGCCCAACCTTTAATCCAAGAGTTATTGAAAAGCCAGTTAAACCTCGCCGCTGTGCATTATCTCCAGGGACGTTTG
CTCACCCAGCGGGGGGATTTTTCGGAAGCCCTCGCCGCTTTTCGGGCCAGTAGTGAGCGGGACCCAACCTACGCCAATGC
CTACTTTGCGGCGGCCCAACTTCTGATCAAAAATAATCAACGTGCCGCCGCGATGCCCCTGTTGGACTATGCCCATTCCC
TCTATGGCCAGCAGCAACAGGCTCCCTGGCTAGAAGCAGTTCAAACCCTCCGGCAACAACTCCAAAATTCGCAATAG

Upstream 100 bases:

>100_bases
GCTAATCTTCTTGGGTAAGAGGGACAAGATACGCCCTAGTGGTAAGCCTAACGCCGTTTGGCGGCCTGCTGCGTAAAACT
GATATGTCTTGTAAGGTATT

Downstream 100 bases:

>100_bases
GGTCTGAAAAAGGCGATCGCCTTTTCCTAAAAAATCCATTAGTGAATGGCTTTTGTTTGTAGGGTCATAATGGTTTGAAT
CCCTTTTTCTGCAACATCGA

Product: TPR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MRLSLSWINICKSVLNLFTLRNVFIALLFLGLPRGEAIAQEIPQTPALQTWPSITPTTPAAKAKLSEGLALIQQGNLDGA
IAQFQQAIALDPLLWQAHYNLGLALGQRGDLPSAAQAFLETIALQPNFAVAYGNLGGVLIDSQNWPQAETYLRRALSLDP
NLAIAHYNLGLIYRHQGNRDAAIQAWQKARELAPNFPDATIQLAELYLAGDRPEAAQPLIQELLKSQLNLAAVHYLQGRL
LTQRGDFSEALAAFRASSERDPTYANAYFAAAQLLIKNNQRAAAMPLLDYAHSLYGQQQQAPWLEAVQTLRQQLQNSQ

Sequences:

>Translated_318_residues
MRLSLSWINICKSVLNLFTLRNVFIALLFLGLPRGEAIAQEIPQTPALQTWPSITPTTPAAKAKLSEGLALIQQGNLDGA
IAQFQQAIALDPLLWQAHYNLGLALGQRGDLPSAAQAFLETIALQPNFAVAYGNLGGVLIDSQNWPQAETYLRRALSLDP
NLAIAHYNLGLIYRHQGNRDAAIQAWQKARELAPNFPDATIQLAELYLAGDRPEAAQPLIQELLKSQLNLAAVHYLQGRL
LTQRGDFSEALAAFRASSERDPTYANAYFAAAQLLIKNNQRAAAMPLLDYAHSLYGQQQQAPWLEAVQTLRQQLQNSQ
>Mature_318_residues
MRLSLSWINICKSVLNLFTLRNVFIALLFLGLPRGEAIAQEIPQTPALQTWPSITPTTPAAKAKLSEGLALIQQGNLDGA
IAQFQQAIALDPLLWQAHYNLGLALGQRGDLPSAAQAFLETIALQPNFAVAYGNLGGVLIDSQNWPQAETYLRRALSLDP
NLAIAHYNLGLIYRHQGNRDAAIQAWQKARELAPNFPDATIQLAELYLAGDRPEAAQPLIQELLKSQLNLAAVHYLQGRL
LTQRGDFSEALAAFRASSERDPTYANAYFAAAQLLIKNNQRAAAMPLLDYAHSLYGQQQQAPWLEAVQTLRQQLQNSQ

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307148, Length=206, Percent_Identity=33.9805825242718, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI32307150, Length=206, Percent_Identity=33.9805825242718, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI22749211, Length=233, Percent_Identity=27.8969957081545, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI118766330, Length=199, Percent_Identity=28.1407035175879, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI118766328, Length=199, Percent_Identity=28.1407035175879, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115532692, Length=272, Percent_Identity=29.7794117647059, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI115532690, Length=272, Percent_Identity=29.7794117647059, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI25147174, Length=214, Percent_Identity=28.5046728971963, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI17647755, Length=228, Percent_Identity=32.0175438596491, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24585827, Length=228, Percent_Identity=32.0175438596491, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24585829, Length=228, Percent_Identity=32.0175438596491, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI19920486, Length=219, Percent_Identity=30.5936073059361, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161076610, Length=219, Percent_Identity=30.5936073059361, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 35011; Mature: 35011

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSLSWINICKSVLNLFTLRNVFIALLFLGLPRGEAIAQEIPQTPALQTWPSITPTTPA
CEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCH
AKAKLSEGLALIQQGNLDGAIAQFQQAIALDPLLWQAHYNLGLALGQRGDLPSAAQAFLE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCHHEEECCCCCCCHHHHHHHH
TIALQPNFAVAYGNLGGVLIDSQNWPQAETYLRRALSLDPNLAIAHYNLGLIYRHQGNRD
HHHCCCCCEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECEEEEEEECCCCH
AAIQAWQKARELAPNFPDATIQLAELYLAGDRPEAAQPLIQELLKSQLNLAAVHYLQGRL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTQRGDFSEALAAFRASSERDPTYANAYFAAAQLLIKNNQRAAAMPLLDYAHSLYGQQQQ
HHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
APWLEAVQTLRQQLQNSQ
CCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRLSLSWINICKSVLNLFTLRNVFIALLFLGLPRGEAIAQEIPQTPALQTWPSITPTTPA
CEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCH
AKAKLSEGLALIQQGNLDGAIAQFQQAIALDPLLWQAHYNLGLALGQRGDLPSAAQAFLE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCHHEEECCCCCCCHHHHHHHH
TIALQPNFAVAYGNLGGVLIDSQNWPQAETYLRRALSLDPNLAIAHYNLGLIYRHQGNRD
HHHCCCCCEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECEEEEEEECCCCH
AAIQAWQKARELAPNFPDATIQLAELYLAGDRPEAAQPLIQELLKSQLNLAAVHYLQGRL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTQRGDFSEALAAFRASSERDPTYANAYFAAAQLLIKNNQRAAAMPLLDYAHSLYGQQQQ
HHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
APWLEAVQTLRQQLQNSQ
CCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]