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The map label for this gene is ccsA

Identifier: 170078526

GI number: 170078526

Start: 2004278

End: 2005294

Strand: Direct

Name: ccsA

Synonym: SYNPCC7002_A1921

Alternate gene names: 170078526

Gene position: 2004278-2005294 (Clockwise)

Preceding gene: 170078525

Following gene: 170078527

Centisome position: 66.63

GC content: 53.2

Gene sequence:

>1017_bases
ATGGATTTGGTCGCACTCCAAAGCCTTTTAGATAACACTTCTTTTCTGGTTCTTTTCTTGACGATGCTCCTCTACTGGGG
CGGGGCTGCGTTTCCGAACATTCCGGGCTTAACCGGTTTAGGCACCCTCGGCGTGGCGATCGCCAATCTCTGCATGGCCA
CCCTCCTGGGAGCCCGTTGGTTAGAAGCCGGCTATTTCCCCCTCAGCAATCTTTACGAATCGCTCTTTTTCCTCGCCTGG
GGGGTAACCACCATGCACCTCGTCGCCGAATGGATGAGTCGCAGTCGTTGGGTCGGTGTGATTACTGCTCCGGTTGCCAT
GGGGATCACGGCCTTTGCTGCCCTATCGCTCCCGGCGGAAATGCAAAATTCTGCCCCTCTCGTCCCGGCTCTCAAATCTA
ACTGGCTGATGATGCACGTCAGTGTGATGATGATCAGCTATGCCGCACTCTTGGTGGGATCTCTATTGGCGATCGCCTTT
TTAATTGTCACCAAAGGCCAGAAAATTGAATTGCGAGGCAGTTCTGTTGGTAATGGCAGCTATCGACTCCGCCAGCCCCA
AAACACCACCGACGAAACCCCAGTGACCGTAGTCGCTTTTCAGAAAACCGAACCCCAAAGTAACGGTAATACCGCCGTCC
TAGCATCCCCTGACCTCCAGCAGCTCACTACGACCCCAGCTCTCAGTCCCCAGATGTTGAGCCTTGCCGATACCCTCGAT
AACATCAGCTACCGCATCATTGGCCTAGGATTTCCGCTTTTGACCATTGGGATTATTGCCGGTGCCGTTTGGGCCAACGA
AGCCTGGGGTTCCTATTGGAGTTGGGATCCCAAAGAAACCTGGGCCCTCATCACTTGGTTAGTTTTTGCCGCTTATTTAC
ACGCCCGTATCACCCGGGGTTGGCAAGGTCGACAACCCGCCTTTCTCGCAGCGGCAGGTTTTTTCGTCGTTTGGGTATGT
TATCTAGGGGTCAATATTCTTGGTAAAGGATTGCATTCCTACGGTTGGTTTTTCTAA

Upstream 100 bases:

>100_bases
ATGATCTAATGGGAAAATAAGTAACGATAAAAATTTTTTAATTACAGTCCGCTAAAAGTCCAAGCTTTTTTGATCGATAT
TTTTTTAGGAGAATCGCACA

Downstream 100 bases:

>100_bases
AAATCCGTAAATTTTAAAGAGAAAAAGACATTTCCGTAGGAAAAGCCCGATTAAAATAAGACACAAAGGCGGGAATTGTG
ATCAATCCGCCCGAACCCTC

Product: c-type cytochrome synthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MDLVALQSLLDNTSFLVLFLTMLLYWGGAAFPNIPGLTGLGTLGVAIANLCMATLLGARWLEAGYFPLSNLYESLFFLAW
GVTTMHLVAEWMSRSRWVGVITAPVAMGITAFAALSLPAEMQNSAPLVPALKSNWLMMHVSVMMISYAALLVGSLLAIAF
LIVTKGQKIELRGSSVGNGSYRLRQPQNTTDETPVTVVAFQKTEPQSNGNTAVLASPDLQQLTTTPALSPQMLSLADTLD
NISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHARITRGWQGRQPAFLAAAGFFVVWVC
YLGVNILGKGLHSYGWFF

Sequences:

>Translated_338_residues
MDLVALQSLLDNTSFLVLFLTMLLYWGGAAFPNIPGLTGLGTLGVAIANLCMATLLGARWLEAGYFPLSNLYESLFFLAW
GVTTMHLVAEWMSRSRWVGVITAPVAMGITAFAALSLPAEMQNSAPLVPALKSNWLMMHVSVMMISYAALLVGSLLAIAF
LIVTKGQKIELRGSSVGNGSYRLRQPQNTTDETPVTVVAFQKTEPQSNGNTAVLASPDLQQLTTTPALSPQMLSLADTLD
NISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHARITRGWQGRQPAFLAAAGFFVVWVC
YLGVNILGKGLHSYGWFF
>Mature_338_residues
MDLVALQSLLDNTSFLVLFLTMLLYWGGAAFPNIPGLTGLGTLGVAIANLCMATLLGARWLEAGYFPLSNLYESLFFLAW
GVTTMHLVAEWMSRSRWVGVITAPVAMGITAFAALSLPAEMQNSAPLVPALKSNWLMMHVSVMMISYAALLVGSLLAIAF
LIVTKGQKIELRGSSVGNGSYRLRQPQNTTDETPVTVVAFQKTEPQSNGNTAVLASPDLQQLTTTPALSPQMLSLADTLD
NISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHARITRGWQGRQPAFLAAAGFFVVWVC
YLGVNILGKGLHSYGWFF

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCSA_SYNP2 (B1XQL3)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001735164.1
- GeneID:   6055828
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1921
- HOGENOM:   HBG733666
- OMA:   YNLPALV
- ProtClustDB:   CLSK892624
- HAMAP:   MF_01391
- InterPro:   IPR002541
- InterPro:   IPR017562
- TIGRFAMs:   TIGR03144

Pfam domain/function: PF01578 Cytochrom_C_asm

EC number: NA

Molecular weight: Translated: 36817; Mature: 36817

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1c4e41f4)-; HASH(0x1d0a1be0)-; HASH(0x1d83aca0)-; HASH(0x1d82c030)-; HASH(0x1ca0dd40)-; HASH(0x1d82eb4c)-; HASH(0x1d27a278)-; HASH(0x1d6e07d8)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLVALQSLLDNTSFLVLFLTMLLYWGGAAFPNIPGLTGLGTLGVAIANLCMATLLGARW
CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LEAGYFPLSNLYESLFFLAWGVTTMHLVAEWMSRSRWVGVITAPVAMGITAFAALSLPAE
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCHH
MQNSAPLVPALKSNWLMMHVSVMMISYAALLVGSLLAIAFLIVTKGQKIELRGSSVGNGS
HCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
YRLRQPQNTTDETPVTVVAFQKTEPQSNGNTAVLASPDLQQLTTTPALSPQMLSLADTLD
EEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHH
NISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHARITRG
CCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
WQGRQPAFLAAAGFFVVWVCYLGVNILGKGLHSYGWFF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MDLVALQSLLDNTSFLVLFLTMLLYWGGAAFPNIPGLTGLGTLGVAIANLCMATLLGARW
CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LEAGYFPLSNLYESLFFLAWGVTTMHLVAEWMSRSRWVGVITAPVAMGITAFAALSLPAE
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCHH
MQNSAPLVPALKSNWLMMHVSVMMISYAALLVGSLLAIAFLIVTKGQKIELRGSSVGNGS
HCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
YRLRQPQNTTDETPVTVVAFQKTEPQSNGNTAVLASPDLQQLTTTPALSPQMLSLADTLD
EEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHH
NISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHARITRG
CCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
WQGRQPAFLAAAGFFVVWVCYLGVNILGKGLHSYGWFF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA