| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is gmhB [H]
Identifier: 170078508
GI number: 170078508
Start: 1989724
End: 1990317
Strand: Reverse
Name: gmhB [H]
Synonym: SYNPCC7002_A1903
Alternate gene names: 170078508
Gene position: 1990317-1989724 (Counterclockwise)
Preceding gene: 170078509
Following gene: 170078507
Centisome position: 66.17
GC content: 52.86
Gene sequence:
>594_bases GTGGCTAAACCAGCAGTTTTCCTTGATCGTGATGGTGTCCTTAACATCGAAGCAGGATATATTCACACCCTCGAAGACCT GAATCTAATTCCAGGGGTGGCGGCGGCTGTGCGATCGCTCAACGATCAAGGAATTTTTTGTTGCTTGGTTTCCAACCAAT CGGGGCCAGCCCGGGACTACTACGGCATTGACCATGTAGAAGCCCTCCACACCAGACTGCGTACCCTCCTAAACCAAGAA GCGGCGGCCCACCTCGATGCGCTGTATTATTGCCCTTATTTAAGCCAGTCAGCCGGGGGCACCCACCCAGACTTTACCCA GTGGGGCACCTGGCGTAAGCCGAATACGGGAATGTTGGTGACAGCGGCCTGGGAACATGATTTAGATTTACGCCGTAGTT TTATGGTGGGGGACAAAGCGACGGATATTGACCTCGCCCACAACGCTGGCCTCCGGGGGATTTTGGTCCAAACAGGCTAC GGTAAACAAGTCCTCAGCGGCAAATATCAACACCACACCAAGCCCGATTATGTCGCCAAGGATCTCCAAGATGGGGTGAA TTGGGTATTACAACAGCTCCAAAAGAAGCCATAG
Upstream 100 bases:
>100_bases AAGCTCTTACCGCCAAAGAATGATAAATTGATTGGCATCCAGTCTCCCACTGGAGAAATGGCAGATATTCAACCCAAAGA CGTATTGGCTCAAATTTGGC
Downstream 100 bases:
>100_bases GAATCAAGAAAATACGGAAATCCGCATCTGGGGATGGGGGCGATCGCCGCCTTGAGGTTTTTCCAAGTTCCGGCAAAATA GAGGACGAATCCTTAGACCA
Product: D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase
Products: NA
Alternate protein names: D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [H]
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MAKPAVFLDRDGVLNIEAGYIHTLEDLNLIPGVAAAVRSLNDQGIFCCLVSNQSGPARDYYGIDHVEALHTRLRTLLNQE AAAHLDALYYCPYLSQSAGGTHPDFTQWGTWRKPNTGMLVTAAWEHDLDLRRSFMVGDKATDIDLAHNAGLRGILVQTGY GKQVLSGKYQHHTKPDYVAKDLQDGVNWVLQQLQKKP
Sequences:
>Translated_197_residues MAKPAVFLDRDGVLNIEAGYIHTLEDLNLIPGVAAAVRSLNDQGIFCCLVSNQSGPARDYYGIDHVEALHTRLRTLLNQE AAAHLDALYYCPYLSQSAGGTHPDFTQWGTWRKPNTGMLVTAAWEHDLDLRRSFMVGDKATDIDLAHNAGLRGILVQTGY GKQVLSGKYQHHTKPDYVAKDLQDGVNWVLQQLQKKP >Mature_196_residues AKPAVFLDRDGVLNIEAGYIHTLEDLNLIPGVAAAVRSLNDQGIFCCLVSNQSGPARDYYGIDHVEALHTRLRTLLNQEA AAHLDALYYCPYLSQSAGGTHPDFTQWGTWRKPNTGMLVTAAWEHDLDLRRSFMVGDKATDIDLAHNAGLRGILVQTGYG KQVLSGKYQHHTKPDYVAKDLQDGVNWVLQQLQKKP
Specific function: Converts the D-glycero-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-D-manno-heptose 1-phosphate by removing the phosphate group at the C-7 position [H]
COG id: COG0241
COG function: function code E; Histidinol phosphatase and related phosphatases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gmhB family [H]
Homologues:
Organism=Escherichia coli, GI1786399, Length=201, Percent_Identity=35.3233830845771, Blast_Score=105, Evalue=3e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006549 - InterPro: IPR006543 - InterPro: IPR013954 [H]
Pfam domain/function: PF08645 PNK3P [H]
EC number: 3.1.1.-
Molecular weight: Translated: 21870; Mature: 21739
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKPAVFLDRDGVLNIEAGYIHTLEDLNLIPGVAAAVRSLNDQGIFCCLVSNQSGPARDY CCCCCEEECCCCEEEECCCEEEEHHHCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCC YGIDHVEALHTRLRTLLNQEAAAHLDALYYCPYLSQSAGGTHPDFTQWGTWRKPNTGMLV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE TAAWEHDLDLRRSFMVGDKATDIDLAHNAGLRGILVQTGYGKQVLSGKYQHHTKPDYVAK EEECCCCHHHHHHHHCCCCCCCEEHHCCCCCCEEEEECCCCHHHHCCCCCCCCCHHHHHH DLQDGVNWVLQQLQKKP HHHHHHHHHHHHHHCCC >Mature Secondary Structure AKPAVFLDRDGVLNIEAGYIHTLEDLNLIPGVAAAVRSLNDQGIFCCLVSNQSGPARDY CCCCEEECCCCEEEECCCEEEEHHHCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCC YGIDHVEALHTRLRTLLNQEAAAHLDALYYCPYLSQSAGGTHPDFTQWGTWRKPNTGMLV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE TAAWEHDLDLRRSFMVGDKATDIDLAHNAGLRGILVQTGYGKQVLSGKYQHHTKPDYVAK EEECCCCHHHHHHHHCCCCCCCEEHHCCCCCCEEEEECCCCHHHHCCCCCCCCCHHHHHH DLQDGVNWVLQQLQKKP HHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12240834 [H]