Click here to switch to the map view.

The map label for this gene is rfaQ [H]

Identifier: 170078509

GI number: 170078509

Start: 1990310

End: 1991269

Strand: Reverse

Name: rfaQ [H]

Synonym: SYNPCC7002_A1904

Alternate gene names: 170078509

Gene position: 1991269-1990310 (Counterclockwise)

Preceding gene: 170078511

Following gene: 170078508

Centisome position: 66.2

GC content: 53.44

Gene sequence:

>960_bases
ATGCGCATACTAGCCCTAGTTCCCGGAGGAGTTGGCGACCAAATCCTCTTCTTCCCGACCCTCGCTGATCTCAAGGAACG
TTATCCCGAAGCCATGATTGACGTTCTGGTCGAACCCCGTGCCAAGGCAGCCTATCGCGTCTGTCCCCAGGTTCATGAAG
TGCTGACCTTCGACTTTAAAGATCGTAATGGCCCCGCTGACTATCTCAATATTCTCGGCACCATCCGCGATCGCGAATAC
GAAATTGCCCTCTCCCTCGGCAAAAATTGGGCTGTGGGCTTCCTGCTCTGGCTGAATGGAATTCCCACCCGCGTGGGCTA
CAAAACCGCAACATCTTGGTTTATCTCCAATCCAGCCCCCCTCAACGAAAACCAATACGCAGCGGCCCTCTACCACGATC
TCCTCAAAGGCTTAGGCATTGACACCGATTGTCCATCCCCCAGTATCACAGTGCCCAATGGGGACATTCAGTGGGCTGAA
GGGGAACAAAAACGCCTGGACTTAACCGAGGGGTATATCCTGATTCACGGTGGTGCCAGTCAACTCTCCCAAGCCAAGGG
CATCAACAAACTCTACCCTGTGGCAAATTGGCAACCGATCATTGAAGATATCCAGAGCAAGCAGCCAAACCTCCCGATTG
TCTTGCTCCAAGGCCCCGACGATGCCCCTTGGGTCACGGAACTCATTGCCCTTTATCCAGCGCTCAAGGTGACACGGCCT
GAGGATATTGGTAAAGCAGCAGCCATGATTGCCGGGGCCAACTTGATGGTTTGTACAGATAGTGCGCCGATGCACCTGGC
CGCCGCCGTGGGGACTTACACCATTGCTCTCTTTGGTGCGACCCACGCCGAAAAGCTCTTACCGCCAAAGAATGATAAAT
TGATTGGCATCCAGTCTCCCACTGGAGAAATGGCAGATATTCAACCCAAAGACGTATTGGCTCAAATTTGGCGTGGCTAA

Upstream 100 bases:

>100_bases
AGGCAATAACAAGTGCACCATGGCTTTTCCCTAAGTTACTAAACGTTTCCGCCTATTCTCTTCTAAAATGATGCTGGATA
CGTAAGTTTATACCCCCAAG

Downstream 100 bases:

>100_bases
ACCAGCAGTTTTCCTTGATCGTGATGGTGTCCTTAACATCGAAGCAGGATATATTCACACCCTCGAAGACCTGAATCTAA
TTCCAGGGGTGGCGGCGGCT

Product: heptosyltransferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MRILALVPGGVGDQILFFPTLADLKERYPEAMIDVLVEPRAKAAYRVCPQVHEVLTFDFKDRNGPADYLNILGTIRDREY
EIALSLGKNWAVGFLLWLNGIPTRVGYKTATSWFISNPAPLNENQYAAALYHDLLKGLGIDTDCPSPSITVPNGDIQWAE
GEQKRLDLTEGYILIHGGASQLSQAKGINKLYPVANWQPIIEDIQSKQPNLPIVLLQGPDDAPWVTELIALYPALKVTRP
EDIGKAAAMIAGANLMVCTDSAPMHLAAAVGTYTIALFGATHAEKLLPPKNDKLIGIQSPTGEMADIQPKDVLAQIWRG

Sequences:

>Translated_319_residues
MRILALVPGGVGDQILFFPTLADLKERYPEAMIDVLVEPRAKAAYRVCPQVHEVLTFDFKDRNGPADYLNILGTIRDREY
EIALSLGKNWAVGFLLWLNGIPTRVGYKTATSWFISNPAPLNENQYAAALYHDLLKGLGIDTDCPSPSITVPNGDIQWAE
GEQKRLDLTEGYILIHGGASQLSQAKGINKLYPVANWQPIIEDIQSKQPNLPIVLLQGPDDAPWVTELIALYPALKVTRP
EDIGKAAAMIAGANLMVCTDSAPMHLAAAVGTYTIALFGATHAEKLLPPKNDKLIGIQSPTGEMADIQPKDVLAQIWRG
>Mature_319_residues
MRILALVPGGVGDQILFFPTLADLKERYPEAMIDVLVEPRAKAAYRVCPQVHEVLTFDFKDRNGPADYLNILGTIRDREY
EIALSLGKNWAVGFLLWLNGIPTRVGYKTATSWFISNPAPLNENQYAAALYHDLLKGLGIDTDCPSPSITVPNGDIQWAE
GEQKRLDLTEGYILIHGGASQLSQAKGINKLYPVANWQPIIEDIQSKQPNLPIVLLQGPDDAPWVTELIALYPALKVTRP
EDIGKAAAMIAGANLMVCTDSAPMHLAAAVGTYTIALFGATHAEKLLPPKNDKLIGIQSPTGEMADIQPKDVLAQIWRG

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=291, Percent_Identity=26.1168384879725, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 34859; Mature: 34859

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILALVPGGVGDQILFFPTLADLKERYPEAMIDVLVEPRAKAAYRVCPQVHEVLTFDFK
CEEEEEECCCCCCCEEEECCHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEC
DRNGPADYLNILGTIRDREYEIALSLGKNWAVGFLLWLNGIPTRVGYKTATSWFISNPAP
CCCCHHHHHHHHHHHCCCCEEEEEEECCCHHEEHEEECCCCCCCCCCHHHHEEEECCCCC
LNENQYAAALYHDLLKGLGIDTDCPSPSITVPNGDIQWAEGEQKRLDLTEGYILIHGGAS
CCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEECCCCCCEEEECCCEEEEECCHH
QLSQAKGINKLYPVANWQPIIEDIQSKQPNLPIVLLQGPDDAPWVTELIALYPALKVTRP
HHHHHCCCCHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
EDIGKAAAMIAGANLMVCTDSAPMHLAAAVGTYTIALFGATHAEKLLPPKNDKLIGIQSP
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHEEEEEEECCHHHHCCCCCCCCEEEEECC
TGEMADIQPKDVLAQIWRG
CCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRILALVPGGVGDQILFFPTLADLKERYPEAMIDVLVEPRAKAAYRVCPQVHEVLTFDFK
CEEEEEECCCCCCCEEEECCHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEC
DRNGPADYLNILGTIRDREYEIALSLGKNWAVGFLLWLNGIPTRVGYKTATSWFISNPAP
CCCCHHHHHHHHHHHCCCCEEEEEEECCCHHEEHEEECCCCCCCCCCHHHHEEEECCCCC
LNENQYAAALYHDLLKGLGIDTDCPSPSITVPNGDIQWAEGEQKRLDLTEGYILIHGGAS
CCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEECCCCCCEEEECCCEEEEECCHH
QLSQAKGINKLYPVANWQPIIEDIQSKQPNLPIVLLQGPDDAPWVTELIALYPALKVTRP
HHHHHCCCCHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
EDIGKAAAMIAGANLMVCTDSAPMHLAAAVGTYTIALFGATHAEKLLPPKNDKLIGIQSP
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHEEEEEEECCHHHHCCCCCCCCEEEEECC
TGEMADIQPKDVLAQIWRG
CCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA