Click here to switch to the map view.

The map label for this gene is dnaB [H]

Identifier: 170078485

GI number: 170078485

Start: 1967700

End: 1969847

Strand: Reverse

Name: dnaB [H]

Synonym: SYNPCC7002_A1879

Alternate gene names: 170078485

Gene position: 1969847-1967700 (Counterclockwise)

Preceding gene: 170078486

Following gene: 170078484

Centisome position: 65.49

GC content: 50.28

Gene sequence:

>2148_bases
ATGTATAGCAATTCCCTTGCAACTAATAAGGTAACACCGATTTTTTCGGATCGCAGCTTGCCCCCCCAGAACCTCGACGC
TGAGGAAATGATCTTGGGGGGGATTTTAATGGGGGGAGCTGCAGCCCTGGCCCGGGTGAAACACATCCTAGAGCCAGAAG
CCTTTTATGTGTCAGCTCACCGCCAGATTTATCAAGAGTTTCTGAAGCTGGATCAAAAAAATCTCCCCATTGATCTGCTG
ACAGTCATCTCTACCTTGAGCGCAAAGAAAAAATTTTTTGAGACCATCGGTGGGACTGCTAAATTATCTTTGCTGGTGGA
TCGCACCGTCTCGGATGTGAATCTAGATCATTATGCTGATCTGGTACAGCAAGCCTTTCTCCGGCGACAGGCGATCGCCA
TCGCAGAAGAGGTCATCTCCCACGCCTACAGCCGCGATACTCCGGTTAGTGACCTAGCCAATGTGATCCGCGATCGCTTT
ACAGAGATCACCGCTTCACCCCTGATGACCGGAGAGGCGAAATCGATCAAGCTCCACCAATGCGATCGCCTCCTCGAAAA
GCTCAATCACATTCAGTTGGATATCGACAGCCCCACCTACAAAGAATTTATGCTCCAGGAGCTGGCAAGGGAAACCGGGC
GATCGCCGGCCCAGCTCCAGAGCCTTTTTTATAAATCCCTCATCGAGGACGAATGGGAACCGACCCTAAGCCTTTCCCAA
TTGCGCGATAAATACGGCGATCAGGTGCGGGAATGGCTTTTACATGGATTCATACCAAAAGGAGCAACCACCCTGCTCCA
TGCCCTCGGTGGCCAGGGGAAAACGAGACTTTTGTATGACTTCATCTATCACCTCGCCCTAGGGGAATCTTGGCAGGGCT
TCCCCGTTACAAAAAAAGCCAAGATTCTCATCATCCAGACCGATGAACAGCCCGTTGATATGTTGGCCGCCCTCGAAGTG
CGGGGCATTCGCCCAGACGATCCACGCTTTGATATCCACTACAAAACCCGTTGGTCTACCGAACATATCCCCCAGCTCTA
CCGGGAAGTCCAGAACGAACGCTACGACCTTATCCTGATCGACTCCCTCGCCTCCGTGAGCCGCTTCTCTACCGTCAGTG
AGAATGATGCAGAGTTTGCGAAGCCCATATTGCTGCTCAACAAGATCGCCGCCGACTTCAACACCGCGATCATGTTGGTT
CACCATTCCAGCAAATCCGGGGACGCCAGGGGCACCACCGCCGTTTACAATGCCGTCTCCCAGGTCTTCCAACTCACCAA
AGACCCCCAAGACCTAAACCCCTCATCCTGTGAGCGAATCCTCTGCATCCAGAAGAGCCGCGCCCGCCGCCCTGCTAAAT
ATGCCCTGGTGTTTAACCCAGAGGAAGGGTCATGGGTTTGCGAAGGAGAAGCCACTCTCACCCCAGACCCAGATTCTTCT
TTAAAAGAGCAGGTTTCTCAATTCCTAAGCCAACACAGAGGGGTAAAGTTTGGCAGTCGAGATTTAGCGGAAGCCCTAAA
CTTTAATACCAATTCTGTTAGAAAGGTTCTTGGCCAACTGGCCGCAGACGGAATTATTTCCTGGAGAAAACAGGGCCGGA
GCAAGACTTATTGGATCGACGCCTTCGAGGAAATGGTTAAGGGAAGGTTAACTGATCCGCCCATGGATCAGGTCGGATCA
GATGCGGATCAGTTCGTGGATCAGTTCGCTAACCCAGACGGGGTAAAGGATGTAGCTCTAACTGATCCATTGATCCAAAA
AAACGAAAAATTTTTGAGAAAAAAATCTGGAGAAAAAGCGGATCAACGGATCAGGTCGTCTGAAACCCAGTCAGGGCATA
AAACACAAACTGATCCACCCTCCGGATCAGTTCGGATCAGTTCGGATCAGGTGGATCAGATGGATCAGATGGATCAGATA
GAAAAAGGCGATCGCGTCACGGTGGCCCAGGGCTGTGAGATATATCCAAAGGTGGGAATCCTCTGGGAAGCCGGAACGAT
ATTGGAAGTTTTAGATATTGGGAGAAAAGGCATCTATTCTAATCAGCTTCAAGTGAAAAGATTGGGTGACAATTCTCATG
CTGCCTGGATACCAATCGCCAATATTGAAATCAATCATGTGTCAAAGGAGGATAAAAATCATGGCTAA

Upstream 100 bases:

>100_bases
CCAGATTAAACCAGTAATTATTTTTGGGCAAAAAAAAGGGGGGAGACCCCTCTCGCCCCTAGTGAAAATCAACTTCTTTA
ATGGAGGAAGAATATCAATT

Downstream 100 bases:

>100_bases
ACTCCATCCCGTAAAGGCGATCGCCTGGGCACACCGCCACAAACAACAACCCCTTTTGGAGGCGTTGATCCTCTATGGCT
ACCCACGCCTCAGACCGCTA

Product: putative replicative DNA helicase

Products: NA

Alternate protein names: Asp dnaB intein [H]

Number of amino acids: Translated: 715; Mature: 715

Protein sequence:

>715_residues
MYSNSLATNKVTPIFSDRSLPPQNLDAEEMILGGILMGGAAALARVKHILEPEAFYVSAHRQIYQEFLKLDQKNLPIDLL
TVISTLSAKKKFFETIGGTAKLSLLVDRTVSDVNLDHYADLVQQAFLRRQAIAIAEEVISHAYSRDTPVSDLANVIRDRF
TEITASPLMTGEAKSIKLHQCDRLLEKLNHIQLDIDSPTYKEFMLQELARETGRSPAQLQSLFYKSLIEDEWEPTLSLSQ
LRDKYGDQVREWLLHGFIPKGATTLLHALGGQGKTRLLYDFIYHLALGESWQGFPVTKKAKILIIQTDEQPVDMLAALEV
RGIRPDDPRFDIHYKTRWSTEHIPQLYREVQNERYDLILIDSLASVSRFSTVSENDAEFAKPILLLNKIAADFNTAIMLV
HHSSKSGDARGTTAVYNAVSQVFQLTKDPQDLNPSSCERILCIQKSRARRPAKYALVFNPEEGSWVCEGEATLTPDPDSS
LKEQVSQFLSQHRGVKFGSRDLAEALNFNTNSVRKVLGQLAADGIISWRKQGRSKTYWIDAFEEMVKGRLTDPPMDQVGS
DADQFVDQFANPDGVKDVALTDPLIQKNEKFLRKKSGEKADQRIRSSETQSGHKTQTDPPSGSVRISSDQVDQMDQMDQI
EKGDRVTVAQGCEIYPKVGILWEAGTILEVLDIGRKGIYSNQLQVKRLGDNSHAAWIPIANIEINHVSKEDKNHG

Sequences:

>Translated_715_residues
MYSNSLATNKVTPIFSDRSLPPQNLDAEEMILGGILMGGAAALARVKHILEPEAFYVSAHRQIYQEFLKLDQKNLPIDLL
TVISTLSAKKKFFETIGGTAKLSLLVDRTVSDVNLDHYADLVQQAFLRRQAIAIAEEVISHAYSRDTPVSDLANVIRDRF
TEITASPLMTGEAKSIKLHQCDRLLEKLNHIQLDIDSPTYKEFMLQELARETGRSPAQLQSLFYKSLIEDEWEPTLSLSQ
LRDKYGDQVREWLLHGFIPKGATTLLHALGGQGKTRLLYDFIYHLALGESWQGFPVTKKAKILIIQTDEQPVDMLAALEV
RGIRPDDPRFDIHYKTRWSTEHIPQLYREVQNERYDLILIDSLASVSRFSTVSENDAEFAKPILLLNKIAADFNTAIMLV
HHSSKSGDARGTTAVYNAVSQVFQLTKDPQDLNPSSCERILCIQKSRARRPAKYALVFNPEEGSWVCEGEATLTPDPDSS
LKEQVSQFLSQHRGVKFGSRDLAEALNFNTNSVRKVLGQLAADGIISWRKQGRSKTYWIDAFEEMVKGRLTDPPMDQVGS
DADQFVDQFANPDGVKDVALTDPLIQKNEKFLRKKSGEKADQRIRSSETQSGHKTQTDPPSGSVRISSDQVDQMDQMDQI
EKGDRVTVAQGCEIYPKVGILWEAGTILEVLDIGRKGIYSNQLQVKRLGDNSHAAWIPIANIEINHVSKEDKNHG
>Mature_715_residues
MYSNSLATNKVTPIFSDRSLPPQNLDAEEMILGGILMGGAAALARVKHILEPEAFYVSAHRQIYQEFLKLDQKNLPIDLL
TVISTLSAKKKFFETIGGTAKLSLLVDRTVSDVNLDHYADLVQQAFLRRQAIAIAEEVISHAYSRDTPVSDLANVIRDRF
TEITASPLMTGEAKSIKLHQCDRLLEKLNHIQLDIDSPTYKEFMLQELARETGRSPAQLQSLFYKSLIEDEWEPTLSLSQ
LRDKYGDQVREWLLHGFIPKGATTLLHALGGQGKTRLLYDFIYHLALGESWQGFPVTKKAKILIIQTDEQPVDMLAALEV
RGIRPDDPRFDIHYKTRWSTEHIPQLYREVQNERYDLILIDSLASVSRFSTVSENDAEFAKPILLLNKIAADFNTAIMLV
HHSSKSGDARGTTAVYNAVSQVFQLTKDPQDLNPSSCERILCIQKSRARRPAKYALVFNPEEGSWVCEGEATLTPDPDSS
LKEQVSQFLSQHRGVKFGSRDLAEALNFNTNSVRKVLGQLAADGIISWRKQGRSKTYWIDAFEEMVKGRLTDPPMDQVGS
DADQFVDQFANPDGVKDVALTDPLIQKNEKFLRKKSGEKADQRIRSSETQSGHKTQTDPPSGSVRISSDQVDQMDQMDQI
EKGDRVTVAQGCEIYPKVGILWEAGTILEVLDIGRKGIYSNQLQVKRLGDNSHAAWIPIANIEINHVSKEDKNHG

Specific function: The intein is an endonuclease (Potential) [H]

COG id: COG0305

COG function: function code L; Replicative DNA helicase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SF4 helicase domain [H]

Homologues:

Organism=Escherichia coli, GI1790486, Length=155, Percent_Identity=27.741935483871, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007692
- InterPro:   IPR007694
- InterPro:   IPR007693
- InterPro:   IPR016136
- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR006142
- InterPro:   IPR004042
- InterPro:   IPR006141 [H]

Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 80314; Mature: 80314

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSNSLATNKVTPIFSDRSLPPQNLDAEEMILGGILMGGAAALARVKHILEPEAFYVSAH
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RQIYQEFLKLDQKNLPIDLLTVISTLSAKKKFFETIGGTAKLSLLVDRTVSDVNLDHYAD
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHH
LVQQAFLRRQAIAIAEEVISHAYSRDTPVSDLANVIRDRFTEITASPLMTGEAKSIKLHQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
CDRLLEKLNHIQLDIDSPTYKEFMLQELARETGRSPAQLQSLFYKSLIEDEWEPTLSLSQ
HHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHH
LRDKYGDQVREWLLHGFIPKGATTLLHALGGQGKTRLLYDFIYHLALGESWQGFPVTKKA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
KILIIQTDEQPVDMLAALEVRGIRPDDPRFDIHYKTRWSTEHIPQLYREVQNERYDLILI
EEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
DSLASVSRFSTVSENDAEFAKPILLLNKIAADFNTAIMLVHHSSKSGDARGTTAVYNAVS
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHH
QVFQLTKDPQDLNPSSCERILCIQKSRARRPAKYALVFNPEEGSWVCEGEATLTPDPDSS
HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCEECCCCCHH
LKEQVSQFLSQHRGVKFGSRDLAEALNFNTNSVRKVLGQLAADGIISWRKQGRSKTYWID
HHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHH
AFEEMVKGRLTDPPMDQVGSDADQFVDQFANPDGVKDVALTDPLIQKNEKFLRKKSGEKA
HHHHHHCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHCCCHH
DQRIRSSETQSGHKTQTDPPSGSVRISSDQVDQMDQMDQIEKGDRVTVAQGCEIYPKVGI
HHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCEECCCCEE
LWEAGTILEVLDIGRKGIYSNQLQVKRLGDNSHAAWIPIANIEINHVSKEDKNHG
EECCCHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECEEEECCCCCCCCCC
>Mature Secondary Structure
MYSNSLATNKVTPIFSDRSLPPQNLDAEEMILGGILMGGAAALARVKHILEPEAFYVSAH
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RQIYQEFLKLDQKNLPIDLLTVISTLSAKKKFFETIGGTAKLSLLVDRTVSDVNLDHYAD
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHH
LVQQAFLRRQAIAIAEEVISHAYSRDTPVSDLANVIRDRFTEITASPLMTGEAKSIKLHQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
CDRLLEKLNHIQLDIDSPTYKEFMLQELARETGRSPAQLQSLFYKSLIEDEWEPTLSLSQ
HHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHH
LRDKYGDQVREWLLHGFIPKGATTLLHALGGQGKTRLLYDFIYHLALGESWQGFPVTKKA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
KILIIQTDEQPVDMLAALEVRGIRPDDPRFDIHYKTRWSTEHIPQLYREVQNERYDLILI
EEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
DSLASVSRFSTVSENDAEFAKPILLLNKIAADFNTAIMLVHHSSKSGDARGTTAVYNAVS
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHH
QVFQLTKDPQDLNPSSCERILCIQKSRARRPAKYALVFNPEEGSWVCEGEATLTPDPDSS
HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCEECCCCCHH
LKEQVSQFLSQHRGVKFGSRDLAEALNFNTNSVRKVLGQLAADGIISWRKQGRSKTYWID
HHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHH
AFEEMVKGRLTDPPMDQVGSDADQFVDQFANPDGVKDVALTDPLIQKNEKFLRKKSGEKA
HHHHHHCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHCCCHH
DQRIRSSETQSGHKTQTDPPSGSVRISSDQVDQMDQMDQIEKGDRVTVAQGCEIYPKVGI
HHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCEECCCCEE
LWEAGTILEVLDIGRKGIYSNQLQVKRLGDNSHAAWIPIANIEINHVSKEDKNHG
EECCCHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]