Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

Click here to switch to the map view.

The map label for this gene is 170078484

Identifier: 170078484

GI number: 170078484

Start: 1967160

End: 1967573

Strand: Reverse

Name: 170078484

Synonym: SYNPCC7002_A1878

Alternate gene names: NA

Gene position: 1967573-1967160 (Counterclockwise)

Preceding gene: 170078485

Following gene: 170078475

Centisome position: 65.41

GC content: 49.76

Gene sequence:

>414_bases
ATGCCGATGAAACGTGAGCTTTATCCCGACAACTGGGAGGCGATCGCCCTCGAAATCAAAGAGTCAGTCCATTGGTTTTG
TGAAAAATGTGGCCGGCCATGCCGTCGCCCTGGGGAGGATTGGTTTGATTTCCTAGAAAAATTACAAAGCACTTTCCCCC
AGTGGTACCAGCAATATGAAGAAGAAGTTTATGACGATGACACCGGAGAATGGGGGTACATCGAGAAACGGGGCCGCTTT
ATCCTCACCGTGGCCCACCTCGATCACAATCCGGCCAATTGCGATCGCCAAAACCTAAAGGCTCTTTGCAGTGTTTGCCA
TCTCCGAAACGATCACAGTCACCACCTCAAAAACGCCTCACGGACGCGCTTCCTTAAAAAGCAGGTTGATGGTCAACTTT
CCTTGTTCGAATAA

Upstream 100 bases:

>100_bases
GGGCACACCGCCACAAACAACAACCCCTTTTGGAGGCGTTGATCCTCTATGGCTACCCACGCCTCAGACCGCTATTTGAG
TTCCTCATGGAGGACAAGCG

Downstream 100 bases:

>100_bases
TCTTATTTCCGTCGCCAAAACTCCCCAGCAACGGGAACGCCCATCAAAACGCAGCTCACCCAGAGCAGGGGCTTCAGCCG
TTGTTCCGGGATGTCTGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MPMKRELYPDNWEAIALEIKESVHWFCEKCGRPCRRPGEDWFDFLEKLQSTFPQWYQQYEEEVYDDDTGEWGYIEKRGRF
ILTVAHLDHNPANCDRQNLKALCSVCHLRNDHSHHLKNASRTRFLKKQVDGQLSLFE

Sequences:

>Translated_137_residues
MPMKRELYPDNWEAIALEIKESVHWFCEKCGRPCRRPGEDWFDFLEKLQSTFPQWYQQYEEEVYDDDTGEWGYIEKRGRF
ILTVAHLDHNPANCDRQNLKALCSVCHLRNDHSHHLKNASRTRFLKKQVDGQLSLFE
>Mature_136_residues
PMKRELYPDNWEAIALEIKESVHWFCEKCGRPCRRPGEDWFDFLEKLQSTFPQWYQQYEEEVYDDDTGEWGYIEKRGRFI
LTVAHLDHNPANCDRQNLKALCSVCHLRNDHSHHLKNASRTRFLKKQVDGQLSLFE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16461; Mature: 16329

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMKRELYPDNWEAIALEIKESVHWFCEKCGRPCRRPGEDWFDFLEKLQSTFPQWYQQYE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EEVYDDDTGEWGYIEKRGRFILTVAHLDHNPANCDRQNLKALCSVCHLRNDHSHHLKNAS
HHHCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
RTRFLKKQVDGQLSLFE
HHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PMKRELYPDNWEAIALEIKESVHWFCEKCGRPCRRPGEDWFDFLEKLQSTFPQWYQQYE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EEVYDDDTGEWGYIEKRGRFILTVAHLDHNPANCDRQNLKALCSVCHLRNDHSHHLKNAS
HHHCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
RTRFLKKQVDGQLSLFE
HHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA