| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078430
Identifier: 170078430
GI number: 170078430
Start: 1909380
End: 1909859
Strand: Direct
Name: 170078430
Synonym: SYNPCC7002_A1824
Alternate gene names: NA
Gene position: 1909380-1909859 (Clockwise)
Preceding gene: 170078429
Following gene: 170078431
Centisome position: 63.48
GC content: 54.37
Gene sequence:
>480_bases ATGTCCTCTGAACCGAAGCGAGATCGGCTCCCCTTCGAGCCCAAGCAAACGAAGCAAAAGGCTCCCAAAAAGCCCCCGGC AACGGCAACAACCCAGTCTAGTTCAGGATCAAATGCGCCTAGGCGATCGCCAAAGGATGAGGCCAGTTTATCGGCGATCC CCGATGCAGTAAGCAAACGGATGATTCGCCGGATGGCCTTATTTTCTGGGATTCCCACGGCCTTGGGGATCACTTCCTTC GTGGTGTCCTACTATATTGTTTCCCGCGAACTTCTGGAGTTGCCCACCATTGCCGTGCTGCTGGTGAGCCTAGGCTGTTT CGGTTTGGGGGTTGTGGGGCTGAGCTACGGTATTCTCTCCACTTCCTGGGATGAAAATCGTCCCGGAAGTCTCTTTGGTT GGGAAGAATTTAGTCTTAACCTTGGTCGGATGGTTCAAGCCTGGCGTGCTAGTCGCCGGGAAGCCCGCAGCAAATCTTAA
Upstream 100 bases:
>100_bases ACGGAAGCGCCTTTTACAATTTATTAAATCTAACGACCAAGAACGTTATCAAACCTTGATTGGTCGTCTCGGAATTCGTC GTTAAGTTTTTACCGAACCC
Downstream 100 bases:
>100_bases AGTTTCGACCCTTGGTTTTTCAGGGTTTCCGAGCTTAAATATCACGTATGCAGCCTTGTCGGTTATCAAAATTTTCTCAG GTGAATGTGTCAAGATAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MSSEPKRDRLPFEPKQTKQKAPKKPPATATTQSSSGSNAPRRSPKDEASLSAIPDAVSKRMIRRMALFSGIPTALGITSF VVSYYIVSRELLELPTIAVLLVSLGCFGLGVVGLSYGILSTSWDENRPGSLFGWEEFSLNLGRMVQAWRASRREARSKS
Sequences:
>Translated_159_residues MSSEPKRDRLPFEPKQTKQKAPKKPPATATTQSSSGSNAPRRSPKDEASLSAIPDAVSKRMIRRMALFSGIPTALGITSF VVSYYIVSRELLELPTIAVLLVSLGCFGLGVVGLSYGILSTSWDENRPGSLFGWEEFSLNLGRMVQAWRASRREARSKS >Mature_158_residues SSEPKRDRLPFEPKQTKQKAPKKPPATATTQSSSGSNAPRRSPKDEASLSAIPDAVSKRMIRRMALFSGIPTALGITSFV VSYYIVSRELLELPTIAVLLVSLGCFGLGVVGLSYGILSTSWDENRPGSLFGWEEFSLNLGRMVQAWRASRREARSKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17418; Mature: 17287
Theoretical pI: Translated: 10.91; Mature: 10.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSEPKRDRLPFEPKQTKQKAPKKPPATATTQSSSGSNAPRRSPKDEASLSAIPDAVSKR CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH MIRRMALFSGIPTALGITSFVVSYYIVSRELLELPTIAVLLVSLGCFGLGVVGLSYGILS HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSWDENRPGSLFGWEEFSLNLGRMVQAWRASRREARSKS CCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SSEPKRDRLPFEPKQTKQKAPKKPPATATTQSSSGSNAPRRSPKDEASLSAIPDAVSKR CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH MIRRMALFSGIPTALGITSFVVSYYIVSRELLELPTIAVLLVSLGCFGLGVVGLSYGILS HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSWDENRPGSLFGWEEFSLNLGRMVQAWRASRREARSKS CCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA