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The map label for this gene is cas3 [C]

Identifier: 170078378

GI number: 170078378

Start: 1856405

End: 1858696

Strand: Direct

Name: cas3 [C]

Synonym: SYNPCC7002_A1771

Alternate gene names: 170078378

Gene position: 1856405-1858696 (Clockwise)

Preceding gene: 170078377

Following gene: 170078379

Centisome position: 61.71

GC content: 45.59

Gene sequence:

>2292_bases
ATGCAGCCTAAACTCAAACCCAATTGTCTCCTCGCAAAATCCTTTGAACCTGGTCACTGGAAAGGTTCCTATAGTTTGGT
GGGTCACACTGCTGATGTGGTCAATGCCATAACAACCTTGGTGGATACTTTGGGCGATCGCCTGATCACTCAATTTGGCT
TAACTTGCTCTTTTCAATACCTGCGGTCAACTGCAAGATTAGCAGCTTATTTACATGACTGGGGTAAAGGTAATAATCAC
TTTCAGGGCATGGTCAGGGCTTCCATTCCCGGTGCGACTCCTAAGCGTTTTTTTGATCAATCTCCCCAAATGTTGCGCCA
TGAAATTGCTTCTGTACTGTTGGCTTGGGAGTTTAGAGAGTGGCTAGAACAAGCTGATGGTGACTTTTATACAGCCCTAG
TGGCAGCAGGTGGGCATCACTTGAAATTAGGTGGGAGGGATGGCAAGGCAACGGATGAACTGGGAGAAATTCGCCAGAGT
GGCGATGCTCAAATATATCTCTATGCTCTCCAGAAAAAAGAAGGCAAAATTGCCTATCACCCTCAATTTAAAGGCTTACT
GAAATACAGTGTTAAAGCTCTGGGTTTACCCAAAAATATCAAACTTTCCAAAGCACCTTCTTTGCAGTGGACTAGAAAAG
ATATTGAGACGAAACAGCATGAAATTCGAGATTATCTAACCCTTGATTGGGAAGGCGATCCAGTGTTTATCGCAGTGGTC
AAAGCCCTATTGGTTGCCGGGGACTGTTCTGGTTCTGCCCTCGCGAAAGAAGATGTTTCACTCCAGAAATGGATTCAAGA
TGAGCTAAAAAACACCCTTGATGAAGACAAGCTTGATCGAGTTATCAAATCTCGTTTAGGTGATCATGAACTCAGAAGAT
TTCAGCAGGATTTAGGAAAAGTAAAAAGTCGTGTGGCGATCGCCCGTGCGGGTTGTGGTACAGGCAAAACTTTGGGGGCA
TACAACTGGGCAAAAACCCATGCTCTAGATCGTAAACTCTTTTTCTGCTATCCCACCACCGGAACCAGTACCGAAGGTTT
TATCGATTATGTCCATGGCAAAGTCGAGGCGGAATTATTTCACTCGCGGTATCAGGTGGATCTGGAAATGATGCAAACGG
GGGAAGAAAATGATCTCGATTCCGGTGCTGATGCAACCATCAAACTCGAATCTTTTCGGGCATGGGGTGCGGAATCTATC
GTTTGTACAGTGGATACTGTCCTTGGTTTATTTCAATGTAATCGCCGTCCCCTCTACTGTTTTCCGGCGATCGCCAATGG
TGCATTTGTTTTCGATGAAGTCCATTGCTACGATGCCAAACCTTTCGGCACATTACTCCGATTCTTACAGGTAGTCAAAG
CTCCGGTACTACTGATGTCTGCATCGGTTCTTCCGTGGCAAAAAGCAGCCATTGAAGCGGCTGTTGGCGAACCTGTAGAA
GTCATTGAAGGGGCAAAAGATCTCGAAGCTTTACCTCGATATCGCTTTCATGTTCTTGATCAACCGGATTGGGAACGAGT
TGAACAGGAGCTAAATTCTGGGGGCAAGGTGCTCTGGGTTTGTAATCAAGTTCAGACAGCTATTGACGTTTACGACGAGG
CAAAACGTAGAGGTTTAGATGCCTTGCTTTATCACAGTCGCTATCGGTATCAGGATCGAAGAGATCACCATCGGGCGGTA
GTGGATGCCTTTAAGCCAGACCAGACTAAACCAGTCATCGCCATTTGTACCCAAGTTGCTGAAATGTCCCTCGATTTATC
AGCCACTTTGTTAGTCTCCCAAATTGCAGATCCAGCGGGATTAATTCAGAGATTAGGGCGCTTAAATCGCCATTATTGCG
GTCATGTCCTTGATGCGCTGTTTTACCCCGACGAAAAAGAAGGATATCCCTACAAAAAAGAGCAACTCGCCGATGGGTTA
GCGATGGTTCAAAACTTTGTGGAAGATGTCAGCCAAGCGGAGTTAGCGCAGTGGTTGGAGGCATTCACCCCAGAACCAAA
TCAAGATGATGGAGAACTGGGTTTAGTGTGGCTCGATGGCAACTGGAAAACCTACCCAGCATCTTTAAGAGAAGGAGGTC
ATAATGTCACAGCTTTATTAGAGGAGGACTTACCCAAGATTAAAAAACTACCCGCCAAGGAAGTTCCCCGATTTACTGTT
CCCATTCCTAATCAAAGCTGGAAACCCAAGGAAAAACACAAATTTTATCCCATCGCTCCCGCTAATATTTGGGGCTATTC
CGAAGAAAAAGGAGCCTTTGATTTGAGAAAACAAGGAGGTGATGTGTCATGA

Upstream 100 bases:

>100_bases
AGTGACAACGATTCTATTAAGTTGCAATGCCTAGGCTTAGGCGGTCGGGGTCATTTTGGTTGTGGTTGGTTCTATCCGAA
AAAAGAGGAGGAACAAACTA

Downstream 100 bases:

>100_bases
CAGAGATGATTCTCTCTTTATTCAACCCCAATAGTCTTTTGCCCCATCGGGCAGGGGTGGCGGGTTTGGCATTGGCTTTA
TCTGCCATTGACCCTACTGA

Product: CRISPR-associated helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 763; Mature: 763

Protein sequence:

>763_residues
MQPKLKPNCLLAKSFEPGHWKGSYSLVGHTADVVNAITTLVDTLGDRLITQFGLTCSFQYLRSTARLAAYLHDWGKGNNH
FQGMVRASIPGATPKRFFDQSPQMLRHEIASVLLAWEFREWLEQADGDFYTALVAAGGHHLKLGGRDGKATDELGEIRQS
GDAQIYLYALQKKEGKIAYHPQFKGLLKYSVKALGLPKNIKLSKAPSLQWTRKDIETKQHEIRDYLTLDWEGDPVFIAVV
KALLVAGDCSGSALAKEDVSLQKWIQDELKNTLDEDKLDRVIKSRLGDHELRRFQQDLGKVKSRVAIARAGCGTGKTLGA
YNWAKTHALDRKLFFCYPTTGTSTEGFIDYVHGKVEAELFHSRYQVDLEMMQTGEENDLDSGADATIKLESFRAWGAESI
VCTVDTVLGLFQCNRRPLYCFPAIANGAFVFDEVHCYDAKPFGTLLRFLQVVKAPVLLMSASVLPWQKAAIEAAVGEPVE
VIEGAKDLEALPRYRFHVLDQPDWERVEQELNSGGKVLWVCNQVQTAIDVYDEAKRRGLDALLYHSRYRYQDRRDHHRAV
VDAFKPDQTKPVIAICTQVAEMSLDLSATLLVSQIADPAGLIQRLGRLNRHYCGHVLDALFYPDEKEGYPYKKEQLADGL
AMVQNFVEDVSQAELAQWLEAFTPEPNQDDGELGLVWLDGNWKTYPASLREGGHNVTALLEEDLPKIKKLPAKEVPRFTV
PIPNQSWKPKEKHKFYPIAPANIWGYSEEKGAFDLRKQGGDVS

Sequences:

>Translated_763_residues
MQPKLKPNCLLAKSFEPGHWKGSYSLVGHTADVVNAITTLVDTLGDRLITQFGLTCSFQYLRSTARLAAYLHDWGKGNNH
FQGMVRASIPGATPKRFFDQSPQMLRHEIASVLLAWEFREWLEQADGDFYTALVAAGGHHLKLGGRDGKATDELGEIRQS
GDAQIYLYALQKKEGKIAYHPQFKGLLKYSVKALGLPKNIKLSKAPSLQWTRKDIETKQHEIRDYLTLDWEGDPVFIAVV
KALLVAGDCSGSALAKEDVSLQKWIQDELKNTLDEDKLDRVIKSRLGDHELRRFQQDLGKVKSRVAIARAGCGTGKTLGA
YNWAKTHALDRKLFFCYPTTGTSTEGFIDYVHGKVEAELFHSRYQVDLEMMQTGEENDLDSGADATIKLESFRAWGAESI
VCTVDTVLGLFQCNRRPLYCFPAIANGAFVFDEVHCYDAKPFGTLLRFLQVVKAPVLLMSASVLPWQKAAIEAAVGEPVE
VIEGAKDLEALPRYRFHVLDQPDWERVEQELNSGGKVLWVCNQVQTAIDVYDEAKRRGLDALLYHSRYRYQDRRDHHRAV
VDAFKPDQTKPVIAICTQVAEMSLDLSATLLVSQIADPAGLIQRLGRLNRHYCGHVLDALFYPDEKEGYPYKKEQLADGL
AMVQNFVEDVSQAELAQWLEAFTPEPNQDDGELGLVWLDGNWKTYPASLREGGHNVTALLEEDLPKIKKLPAKEVPRFTV
PIPNQSWKPKEKHKFYPIAPANIWGYSEEKGAFDLRKQGGDVS
>Mature_763_residues
MQPKLKPNCLLAKSFEPGHWKGSYSLVGHTADVVNAITTLVDTLGDRLITQFGLTCSFQYLRSTARLAAYLHDWGKGNNH
FQGMVRASIPGATPKRFFDQSPQMLRHEIASVLLAWEFREWLEQADGDFYTALVAAGGHHLKLGGRDGKATDELGEIRQS
GDAQIYLYALQKKEGKIAYHPQFKGLLKYSVKALGLPKNIKLSKAPSLQWTRKDIETKQHEIRDYLTLDWEGDPVFIAVV
KALLVAGDCSGSALAKEDVSLQKWIQDELKNTLDEDKLDRVIKSRLGDHELRRFQQDLGKVKSRVAIARAGCGTGKTLGA
YNWAKTHALDRKLFFCYPTTGTSTEGFIDYVHGKVEAELFHSRYQVDLEMMQTGEENDLDSGADATIKLESFRAWGAESI
VCTVDTVLGLFQCNRRPLYCFPAIANGAFVFDEVHCYDAKPFGTLLRFLQVVKAPVLLMSASVLPWQKAAIEAAVGEPVE
VIEGAKDLEALPRYRFHVLDQPDWERVEQELNSGGKVLWVCNQVQTAIDVYDEAKRRGLDALLYHSRYRYQDRRDHHRAV
VDAFKPDQTKPVIAICTQVAEMSLDLSATLLVSQIADPAGLIQRLGRLNRHYCGHVLDALFYPDEKEGYPYKKEQLADGL
AMVQNFVEDVSQAELAQWLEAFTPEPNQDDGELGLVWLDGNWKTYPASLREGGHNVTALLEEDLPKIKKLPAKEVPRFTV
PIPNQSWKPKEKHKFYPIAPANIWGYSEEKGAFDLRKQGGDVS

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=325, Percent_Identity=28, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD [H]

EC number: NA

Molecular weight: Translated: 85766; Mature: 85766

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS00690 DEAH_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPKLKPNCLLAKSFEPGHWKGSYSLVGHTADVVNAITTLVDTLGDRLITQFGLTCSFQY
CCCCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LRSTARLAAYLHDWGKGNNHFQGMVRASIPGATPKRFFDQSPQMLRHEIASVLLAWEFRE
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHH
WLEQADGDFYTALVAAGGHHLKLGGRDGKATDELGEIRQSGDAQIYLYALQKKEGKIAYH
HHHHCCCCEEEHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEEC
PQFKGLLKYSVKALGLPKNIKLSKAPSLQWTRKDIETKQHEIRDYLTLDWEGDPVFIAVV
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCHHHHHH
KALLVAGDCSGSALAKEDVSLQKWIQDELKNTLDEDKLDRVIKSRLGDHELRRFQQDLGK
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHH
VKSRVAIARAGCGTGKTLGAYNWAKTHALDRKLFFCYPTTGTSTEGFIDYVHGKVEAELF
HHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCHHHHHHH
HSRYQVDLEMMQTGEENDLDSGADATIKLESFRAWGAESIVCTVDTVLGLFQCNRRPLYC
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHCCCCCEEEEEHHHHHHHHHCCCCCEEE
FPAIANGAFVFDEVHCYDAKPFGTLLRFLQVVKAPVLLMSASVLPWQKAAIEAAVGEPVE
EEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHH
VIEGAKDLEALPRYRFHVLDQPDWERVEQELNSGGKVLWVCNQVQTAIDVYDEAKRRGLD
HHCCCHHHHHCCCHHEEECCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCH
ALLYHSRYRYQDRRDHHRAVVDAFKPDQTKPVIAICTQVAEMSLDLSATLLVSQIADPAG
HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHH
LIQRLGRLNRHYCGHVLDALFYPDEKEGYPYKKEQLADGLAMVQNFVEDVSQAELAQWLE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFTPEPNQDDGELGLVWLDGNWKTYPASLREGGHNVTALLEEDLPKIKKLPAKEVPRFTV
HHCCCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCEEHHHHHHHHHHHCCCHHHCCEEEE
PIPNQSWKPKEKHKFYPIAPANIWGYSEEKGAFDLRKQGGDVS
CCCCCCCCCCHHCCEECCCCCHHCCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MQPKLKPNCLLAKSFEPGHWKGSYSLVGHTADVVNAITTLVDTLGDRLITQFGLTCSFQY
CCCCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LRSTARLAAYLHDWGKGNNHFQGMVRASIPGATPKRFFDQSPQMLRHEIASVLLAWEFRE
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHH
WLEQADGDFYTALVAAGGHHLKLGGRDGKATDELGEIRQSGDAQIYLYALQKKEGKIAYH
HHHHCCCCEEEHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEEC
PQFKGLLKYSVKALGLPKNIKLSKAPSLQWTRKDIETKQHEIRDYLTLDWEGDPVFIAVV
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCHHHHHH
KALLVAGDCSGSALAKEDVSLQKWIQDELKNTLDEDKLDRVIKSRLGDHELRRFQQDLGK
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHH
VKSRVAIARAGCGTGKTLGAYNWAKTHALDRKLFFCYPTTGTSTEGFIDYVHGKVEAELF
HHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCHHHHHHH
HSRYQVDLEMMQTGEENDLDSGADATIKLESFRAWGAESIVCTVDTVLGLFQCNRRPLYC
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHCCCCCEEEEEHHHHHHHHHCCCCCEEE
FPAIANGAFVFDEVHCYDAKPFGTLLRFLQVVKAPVLLMSASVLPWQKAAIEAAVGEPVE
EEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHH
VIEGAKDLEALPRYRFHVLDQPDWERVEQELNSGGKVLWVCNQVQTAIDVYDEAKRRGLD
HHCCCHHHHHCCCHHEEECCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCH
ALLYHSRYRYQDRRDHHRAVVDAFKPDQTKPVIAICTQVAEMSLDLSATLLVSQIADPAG
HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHH
LIQRLGRLNRHYCGHVLDALFYPDEKEGYPYKKEQLADGLAMVQNFVEDVSQAELAQWLE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFTPEPNQDDGELGLVWLDGNWKTYPASLREGGHNVTALLEEDLPKIKKLPAKEVPRFTV
HHCCCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCEEHHHHHHHHHHHCCCHHHCCEEEE
PIPNQSWKPKEKHKFYPIAPANIWGYSEEKGAFDLRKQGGDVS
CCCCCCCCCCHHCCEECCCCCHHCCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]